The Angiosperm Terrestrial Revolution and the origins of modern biodiversity

MJ Benton, P Wilf, H Sauquet - New Phytologist, 2022 - Wiley Online Library
Biodiversity today has the unusual property that 85% of plant and animal species live on
land rather than in the sea, and half of these live in tropical rainforests. An explosive boost to …

Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna

TLP Couvreur, G Dauby, A Blach‐Overgaard… - Biological …, 2021 - Wiley Online Library
Tropical Africa is home to an astonishing biodiversity occurring in a variety of ecosystems.
Past climatic change and geological events have impacted the evolution and diversification …

MEGA11: molecular evolutionary genetics analysis version 11

K Tamura, G Stecher, S Kumar - Molecular biology and evolution, 2021 - academic.oup.com
Abstract The Molecular Evolutionary Genetics Analysis (MEGA) software has matured to
contain a large collection of methods and tools of computational molecular evolution. Here …

Towards complete and error-free genome assemblies of all vertebrate species

A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti… - Nature, 2021 - nature.com
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …

Evolution of the germline mutation rate across vertebrates

LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …

Evolutionary constraint and innovation across hundreds of placental mammals

MJ Christmas, IM Kaplow, DP Genereux, MX Dong… - Science, 2023 - science.org
Zoonomia is the largest comparative genomics resource for mammals produced to date. By
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …

Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation

NS Upham, JA Esselstyn, W Jetz - PLoS biology, 2019 - journals.plos.org
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …

A global catalog of whole-genome diversity from 233 primate species

LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin… - Science, 2023 - science.org
The rich diversity of morphology and behavior displayed across primate species provides an
informative context in which to study the impact of genomic diversity on fundamental …

A species-level timeline of mammal evolution integrating phylogenomic data

S Álvarez-Carretero, AU Tamuri, M Battini… - Nature, 2022 - nature.com
High-throughput sequencing projects generate genome-scale sequence data for species-
level phylogenies,–. However, state-of-the-art Bayesian methods for inferring timetrees are …

Origin of angiosperms and the puzzle of the Jurassic gap

HT Li, TS Yi, LM Gao, PF Ma, T Zhang, JB Yang… - Nature plants, 2019 - nature.com
Angiosperms are by far the most species-rich clade of land plants, but their origin and early
evolutionary history remain poorly understood. We reconstructed angiosperm phylogeny …