Relative and absolute quantitation in mass spectrometry–based proteomics

JA Ankney, A Muneer, X Chen - Annual review of analytical …, 2018 - annualreviews.org
Mass spectrometry–based quantitative proteomics is a powerful tool for gaining insights into
function and dynamics of biological systems. However, peptides with different sequences …

[HTML][HTML] Good cop, bad cop: The different roles of SRPKs

E Nikolakaki, I Sigala, T Giannakouros - Frontiers in Genetics, 2022 - frontiersin.org
SR Protein Kinases (SRPKs), discovered approximately 30 years ago, are widely known as
splice factor kinases due to their decisive involvement in the regulation of various steps of …

Comparative proteomics reveals a diagnostic signature for pulmonary head‐and‐neck cancer metastasis

H Bohnenberger, L Kaderali, P Ströbel… - EMBO molecular …, 2018 - embopress.org
Patients with head‐and‐neck cancer can develop both lung metastasis and primary lung
cancer during the course of their disease. Despite the clinical importance of discrimination …

[HTML][HTML] Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer

N Babu, SM Pinto, M Biswas, T Subbannayya… - Gastric Cancer, 2020 - Springer
Background Phosphorylation is an important regulatory mechanism of protein activity in
cells. Studies in various cancers have reported perturbations in kinases resulting in aberrant …

Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis

R Verma, SM Pinto, AH Patil, J Advani… - Journal of Proteome …, 2017 - ACS Publications
Mycobacterium tuberculosis, the causative agent of tuberculosis, accounts for 1.5 million
human deaths annually worldwide. Despite efforts to eradicate tuberculosis, it still remains a …

Deep coverage of global protein expression and phosphorylation in breast tumor cell lines using TMT 10-plex isobaric labeling

FK Huang, G Zhang, K Lawlor, A Nazarian… - Journal of proteome …, 2017 - ACS Publications
Labeling peptides with isobaric tags is a popular strategy in quantitative bottom-up
proteomics. In this study, we labeled six breast tumor cell lysates (1.34 mg proteins per …

[HTML][HTML] Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes

MY Bhat, J Advani, P Rajagopalan, K Patel… - Scientific reports, 2018 - nature.com
Carcinogenic effect of tobacco in oral cancer is through chewing and/or smoking. Significant
differences exist in development of oral cancer between tobacco users and non-users …

The SRPK inhibitor N-(2-(piperidin-1-yl)-5-(trifluoromethyl) phenyl) isonicotinamide (SRPIN340) increases the immune response against metastatic melanoma in mice

GA Moreira, MMM Caetano, JA Do Vale… - Biochemical …, 2022 - Elsevier
Cancers have a strong relationship with immune cells in their microenvironment, which
significantly influences tumor proliferation and progression. Thus, pharmacological …

Arsenite exposure displaces zinc from ZRANB2 leading to altered splicing

M Banerjee, AP Ferragut Cardoso… - Chemical research in …, 2020 - ACS Publications
Exposure to arsenic, a class I carcinogen, affects 200 million people globally. Skin is the
major target organ, but the molecular etiology of arsenic-induced skin carcinogenesis …

Impact of phosphoproteomics in the translation of kinase‐targeted therapies

P Casado, M Hijazi, D Britton, PR Cutillas - Proteomics, 2017 - Wiley Online Library
Signaling pathways driven by protein and lipid kinases are altered in most human diseases.
Therefore, pharmacological inhibitors of cell signaling are one of the most intensively …