rotl: an R package to interact with the Open Tree of Life data

F Michonneau, JW Brown… - Methods in Ecology and …, 2016 - Wiley Online Library
While phylogenies have been getting easier to build, it has been difficult to reuse, combine
and synthesize the information they provide because published trees are often only …

A census-based estimate of Earth's bacterial and archaeal diversity

S Louca, F Mazel, M Doebeli, LW Parfrey - PLoS biology, 2019 - journals.plos.org
The global diversity of Bacteria and Archaea, the most ancient and most widespread forms
of life on Earth, is a subject of intense controversy. This controversy stems largely from the …

Bioclip: A vision foundation model for the tree of life

S Stevens, J Wu, MJ Thompson… - Proceedings of the …, 2024 - openaccess.thecvf.com
Images of the natural world collected by a variety of cameras from drones to individual
phones are increasingly abundant sources of biological information. There is an explosion …

Why sequence all eukaryotes?

M Blaxter, JM Archibald, AK Childers… - Proceedings of the …, 2022 - National Acad Sciences
Life on Earth has evolved from initial simplicity to the astounding complexity we experience
today. Bacteria and archaea have largely excelled in metabolic diversification, but …

The evolutionary diversity of barnacles, with an updated classification of fossil and living forms

BKK Chan, N Dreyer, AS Gale… - Zoological Journal of …, 2021 - academic.oup.com
We present a comprehensive revision and synthesis of the higher-level classification of the
barnacles (Crustacea: Thecostraca) to the genus level and including both extant and fossils …

[图书][B] Phylogeny: discrete and random processes in evolution

M Steel - 2016 - SIAM
The idea that all life on earth traces back to a common origin dates back at least to Charles
Darwin's Origin of Species. Ever since, biologists have tried to piece together parts of this …

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

AE Zanne, K Abarenkov, ME Afkhami… - Biological …, 2020 - Wiley Online Library
Fungi play many essential roles in ecosystems. They facilitate plant access to nutrients and
water, serve as decay agents that cycle carbon and nutrients through the soil, water and …

Multivariate phylogenetic comparative methods: evaluations, comparisons, and recommendations

DC Adams, ML Collyer - Systematic biology, 2018 - academic.oup.com
Recent years have seen increased interest in phylogenetic comparative analyses of
multivariate data sets, but to date the varied proposed approaches have not been …

One health relationships between human, animal, and environmental microbiomes: a mini-review

P Trinh, JR Zaneveld, S Safranek… - Frontiers in public …, 2018 - frontiersin.org
The One Health concept stresses the ecological relationships between human, animal, and
environmental health. Much of the One Health literature to date has examined the transfer of …

Developmental temperatures and phenotypic plasticity in reptiles: A systematic review and meta‐analysis

DWA Noble, V Stenhouse, LE Schwanz - Biological Reviews, 2018 - Wiley Online Library
Early environments can profoundly influence an organism in ways that persist over its life. In
reptiles, early thermal environments (nest temperatures) can impact offspring phenotype and …