Mechanisms and concepts in RNA virus population dynamics and evolution

PT Dolan, ZJ Whitfield, R Andino - Annual Review of Virology, 2018 - annualreviews.org
RNA viruses are unique in their evolutionary capacity, exhibiting high mutation rates and
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …

[HTML][HTML] BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

Language trees with sampled ancestors support a hybrid model for the origin of Indo-European languages

P Heggarty, C Anderson, M Scarborough, B King… - Science, 2023 - science.org
The origins of the Indo-European language family are hotly disputed. Bayesian phylogenetic
analyses of core vocabulary have produced conflicting results, with some supporting a …

Paleomicrobiology: diagnosis and evolution of ancient pathogens

KI Bos, D Kühnert, A Herbig… - Annual Review of …, 2019 - annualreviews.org
The last century has witnessed progress in the study of ancient infectious disease from
purely medical descriptions of past ailments to dynamic interpretations of past population …

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

RO Prum, JS Berv, A Dornburg, DJ Field, JP Townsend… - Nature, 2015 - nature.com
Although reconstruction of the phylogeny of living birds has progressed tremendously in the
last decade, the evolutionary history of Neoaves—a clade that encompasses nearly all living …

[HTML][HTML] bModelTest: Bayesian phylogenetic site model averaging and model comparison

RR Bouckaert, AJ Drummond - BMC evolutionary biology, 2017 - Springer
Abstract Background Reconstructing phylogenies through Bayesian methods has many
benefits, which include providing a mathematically sound framework, providing realistic …

Deformed wing virus is a recent global epidemic in honeybees driven by Varroa mites

L Wilfert, G Long, HC Leggett, P Schmid-Hempel… - Science, 2016 - science.org
Deformed wing virus (DWV) and its vector, the mite Varroa destructor, are a major threat to
the world's honeybees. Although the impact of Varroa on colony-level DWV epidemiology is …

Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot

OA Pérez‐Escobar, G Chomicki… - New …, 2017 - Wiley Online Library
Summary The Andean mountains of South America are the most species‐rich biodiversity
hotspot worldwide with c. 15% of the world's plant species, in only 1% of the world's land …

[HTML][HTML] Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus

SM Latorre, VM Were, AJ Foster, T Langner… - PLoS …, 2023 - journals.plos.org
Wheat, one of the most important food crops, is threatened by a blast disease pandemic.
Here, we show that a clonal lineage of the wheat blast fungus recently spread to Asia and …

Evolution of lacewings and allied orders using anchored phylogenomics (N europtera, M egaloptera, R aphidioptera)

SL Winterton, AR Lemmon, JP Gillung… - Systematic …, 2018 - Wiley Online Library
Abstract Analysis of anchored hybrid enrichment (AHE) data under a variety of analytical
parameters for a broadly representative sample of taxa (136 species representing all extant …