Reciprocal best structure hits: using AlphaFold models to discover distant homologues
V Monzon, T Paysan-Lafosse, V Wood… - Bioinformatics …, 2022 - academic.oup.com
Motivation The conventional methods to detect homologous protein pairs use the
comparison of protein sequences. But the sequences of two homologous proteins may …
comparison of protein sequences. But the sequences of two homologous proteins may …
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification
The YgjD/Kae1 family (COG0533) has been on the top‐10 list of universally conserved
proteins of unknown function for over 5 years. It has been linked to DNA maintenance in …
proteins of unknown function for over 5 years. It has been linked to DNA maintenance in …
Biology of telomeres: lessons from budding yeast
M Kupiec - FEMS microbiology reviews, 2014 - academic.oup.com
Telomeres are nucleoprotein structures that cap the ends of the linear eukaryotic
chromosomes and thereby protect their stability and integrity. Telomeres play central roles in …
chromosomes and thereby protect their stability and integrity. Telomeres play central roles in …
[HTML][HTML] Global translational impacts of the loss of the tRNA modification t6A in yeast
PC Thiaville, R Legendre, D Rojas-Benítez… - Microbial …, 2016 - ncbi.nlm.nih.gov
The universal tRNA modification t 6 A is found at position 37 of nearly all tRNAs decoding
ANN codons. The absence of t 6 A 37 leads to severe growth defects in baker's yeast …
ANN codons. The absence of t 6 A 37 leads to severe growth defects in baker's yeast …
Conservation and Diversification of tRNA t6A-Modifying Enzymes across the Three Domains of Life
C Su, M Jin, W Zhang - International Journal of Molecular Sciences, 2022 - mdpi.com
The universal N 6-threonylcarbamoyladenosine (t6A) modification occurs at position 37 of
tRNAs that decipher codons starting with adenosine. Mechanistically, t6A stabilizes …
tRNAs that decipher codons starting with adenosine. Mechanistically, t6A stabilizes …
Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside
C Deutsch, B El Yacoubi, V de Crécy-Lagard… - Journal of Biological …, 2012 - ASBMB
The anticodon stem-loop (ASL) of transfer RNAs (tRNAs) drives decoding by interacting
directly with the mRNA through codon/anticodon pairing. Chemically complex nucleoside …
directly with the mRNA through codon/anticodon pairing. Chemically complex nucleoside …
Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t6A), a universal modification of tRNA
The tRNA modification field has a rich literature covering biochemical analysis going back
more than 40 years, but many of the corresponding genes were only identified in the last …
more than 40 years, but many of the corresponding genes were only identified in the last …
Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria
PC Thiaville, B El Yacoubi, C Köhrer… - Molecular …, 2015 - Wiley Online Library
Threonylcarbamoyladenosine (t6 A) is a modified nucleoside universally conserved in t RNA
s in all three kingdoms of life. The recently discovered genes for t6 A synthesis, including tsa …
s in all three kingdoms of life. The recently discovered genes for t6 A synthesis, including tsa …
Protein phosphorylation and its role in archaeal signal transduction
D Esser, L Hoffmann, TK Pham… - FEMS microbiology …, 2016 - academic.oup.com
Reversible protein phosphorylation is the main mechanism of signal transduction that
enables cells to rapidly respond to environmental changes by controlling the functional …
enables cells to rapidly respond to environmental changes by controlling the functional …
[HTML][HTML] The cancer-testis antigens SPANX-A/C/D and CTAG2 promote breast cancer invasion
EA Maine, JM Westcott, AM Prechtl, TT Dang… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Genes that are normally biased towards expression in the testis are often induced in tumor
cells. These gametogenic genes, known as cancer-testis antigens (CTAs), have been …
cells. These gametogenic genes, known as cancer-testis antigens (CTAs), have been …