Reciprocal best structure hits: using AlphaFold models to discover distant homologues

V Monzon, T Paysan-Lafosse, V Wood… - Bioinformatics …, 2022 - academic.oup.com
Motivation The conventional methods to detect homologous protein pairs use the
comparison of protein sequences. But the sequences of two homologous proteins may …

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification

B El Yacoubi, I Hatin, C Deutsch, T Kahveci… - The EMBO …, 2011 - embopress.org
The YgjD/Kae1 family (COG0533) has been on the top‐10 list of universally conserved
proteins of unknown function for over 5 years. It has been linked to DNA maintenance in …

Biology of telomeres: lessons from budding yeast

M Kupiec - FEMS microbiology reviews, 2014 - academic.oup.com
Telomeres are nucleoprotein structures that cap the ends of the linear eukaryotic
chromosomes and thereby protect their stability and integrity. Telomeres play central roles in …

[HTML][HTML] Global translational impacts of the loss of the tRNA modification t6A in yeast

PC Thiaville, R Legendre, D Rojas-Benítez… - Microbial …, 2016 - ncbi.nlm.nih.gov
The universal tRNA modification t 6 A is found at position 37 of nearly all tRNAs decoding
ANN codons. The absence of t 6 A 37 leads to severe growth defects in baker's yeast …

Conservation and Diversification of tRNA t6A-Modifying Enzymes across the Three Domains of Life

C Su, M Jin, W Zhang - International Journal of Molecular Sciences, 2022 - mdpi.com
The universal N 6-threonylcarbamoyladenosine (t6A) modification occurs at position 37 of
tRNAs that decipher codons starting with adenosine. Mechanistically, t6A stabilizes …

Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside

C Deutsch, B El Yacoubi, V de Crécy-Lagard… - Journal of Biological …, 2012 - ASBMB
The anticodon stem-loop (ASL) of transfer RNAs (tRNAs) drives decoding by interacting
directly with the mRNA through codon/anticodon pairing. Chemically complex nucleoside …

Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t6A), a universal modification of tRNA

PC Thiaville, D Iwata-Reuyl, V de Crécy-Lagard - RNA biology, 2014 - Taylor & Francis
The tRNA modification field has a rich literature covering biochemical analysis going back
more than 40 years, but many of the corresponding genes were only identified in the last …

Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria

PC Thiaville, B El Yacoubi, C Köhrer… - Molecular …, 2015 - Wiley Online Library
Threonylcarbamoyladenosine (t6 A) is a modified nucleoside universally conserved in t RNA
s in all three kingdoms of life. The recently discovered genes for t6 A synthesis, including tsa …

Protein phosphorylation and its role in archaeal signal transduction

D Esser, L Hoffmann, TK Pham… - FEMS microbiology …, 2016 - academic.oup.com
Reversible protein phosphorylation is the main mechanism of signal transduction that
enables cells to rapidly respond to environmental changes by controlling the functional …

[HTML][HTML] The cancer-testis antigens SPANX-A/C/D and CTAG2 promote breast cancer invasion

EA Maine, JM Westcott, AM Prechtl, TT Dang… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Genes that are normally biased towards expression in the testis are often induced in tumor
cells. These gametogenic genes, known as cancer-testis antigens (CTAs), have been …