[HTML][HTML] ycf1, the most promising plastid DNA barcode of land plants

W Dong, C Xu, C Li, J Sun, Y Zuo, S Shi, T Cheng… - Scientific reports, 2015 - nature.com
A DNA barcode is a DNA fragment used to identify species. For land plants, DNA fragments
of plastid genome could be the primary consideration. Unfortunately, most of the plastid …

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

S Wicke, GM Schneeweiss, CW Depamphilis… - Plant molecular …, 2011 - Springer
This review bridges functional and evolutionary aspects of plastid chromosome architecture
in land plants and their putative ancestors. We provide an overview on the structure and …

Recently formed polyploid plants diversify at lower rates

I Mayrose, SH Zhan, CJ Rothfels, K Magnuson-Ford… - Science, 2011 - science.org
Polyploidy, the doubling of genomic content, is a widespread feature, especially among
plants, yet its macroevolutionary impacts are contentious. Traditionally, polyploidy has been …

Plastid genomes of seed plants

RK Jansen, TA Ruhlman - Genomics of chloroplasts and mitochondria, 2012 - Springer
The field of comparative plastid genomics has burgeoned during the past decade, largely
due to the availability of rapid, less expensive genome sequencing technologies. Currently …

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

ML Weng, JC Blazier, M Govindu… - Molecular biology and …, 2014 - academic.oup.com
Geraniaceae plastid genomes are highly rearranged, and each of the four genera already
sequenced in the family has a distinct genome organization. This study reports plastid …

Next–generation sequencing and systematics: What can a billion base pairs of DNA sequence data do for you?

N Harrison, CA Kidner - Taxon, 2011 - Wiley Online Library
The increasing speed and decreasing cost of generating DNA sequence data has
transformed experimental approaches in many fields of biology. In this review we describe …

Evolutionary genomics of ferns and lycophytes

EB Sessa, JP Der - Advances in botanical research, 2016 - Elsevier
Ferns and lycophytes are ubiquitous and charismatic members of many terrestrial
ecosystems. Members of these lineages play key ecological roles in many of Earth's biomes …

Simultaneous diversification of Polypodiales and angiosperms in the Mesozoic

XY Du, JM Lu, LB Zhang, J Wen, LY Kuo… - …, 2021 - Wiley Online Library
Comprising about 82% of the extant fern species diversity, Polypodiales are generally
believed to have diversified in the Late Cretaceous. We estimated the divergence times of …

Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

S Asaf, AL Khan, MA Khan, M Waqas, SM Kang… - Scientific reports, 2017 - nature.com
We investigated the complete chloroplast (cp) genomes of non-model Arabidopsis halleri
ssp. gemmifera and Arabidopsis lyrata ssp. petraea using Illumina paired-end sequencing to …

Gene loss and evolution of the plastome

TK Mohanta, AK Mishra, A Khan, A Hashem… - Genes, 2020 - mdpi.com
Chloroplasts are unique organelles within the plant cells and are responsible for sustaining
life forms on the earth due to their ability to conduct photosynthesis. Multiple functional …