T-cell epitope vaccine design by immunoinformatics

A Patronov, I Doytchinova - Open biology, 2013 - royalsocietypublishing.org
Vaccination is generally considered to be the most effective method of preventing infectious
diseases. All vaccinations work by presenting a foreign antigen to the immune system in …

T cell repertoire profiling and the mechanism by which HLA-B27 causes ankylosing spondylitis

J Garrido-Mesa, MA Brown - Current rheumatology reports, 2022 - Springer
Abstract Purpose of Review Ankylosing spondylitis (AS) is strongly associated with the HLA-
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …

Cancer immunotherapy targeting Wilms' tumor gene WT1 product

Y Oka, K Udaka, A Tsuboi, OA Elisseeva… - The Journal of …, 2000 - journals.aai.org
The Wilms' tumor gene WT1 is expressed at high levels not only in acute myelocytic and
lymphocytic leukemia and in chronic myelocytic leukemia but also in various types of solid …

Identification of high potency microbial and self ligands for a human autoreactive class II–restricted T cell clone

B Hemmer, BT Fleckenstein, M Vergelli… - The Journal of …, 1997 - rupress.org
CD4+ class II–restricted T cells specific for self antigens are thought to be involved in the
pathogenesis of most human autoimmune diseases and molecular mimicry between foreign …

Mixture-based synthetic combinatorial libraries

RA Houghten, C Pinilla, JR Appel… - Journal of medicinal …, 1999 - ACS Publications
In the 15 years since their first description, the conceptual and technical approaches that
encompass combinatorial chemistry have gained wide acceptance across virtually all …

[HTML][HTML] Combinatorial peptide library methods for immunobiology research

R Liu, AM Enstrom, KS Lam - Experimental hematology, 2003 - Elsevier
The field of combinatorial peptide chemistry has emerged as a powerful tool in the study of
many biological systems. This review focuses on combinatorial peptide library methodology …

Probing degeneracy in T-cell recognition using peptide combinatorial libraries

B Hemmer, M Vergelli, C Pinilla, R Houghten, R Martin - Immunology today, 1998 - cell.com
Recent studies have demonstrated flexibility of the T-cell receptor (TCR) with respect to
recognition of peptide bound to self major histocompatibility complex (MHC). With the …

Exploring immunological specificity using synthetic peptide combinatorial libraries

C Pinilla, R Martin, B Gran, JR Appel… - Current Opinion in …, 1999 - Elsevier
The definition of epitopes for human B and T cells is fundamental for the understanding of
the immune response mechanism and its role in the prevention and cause of human …

[HTML][HTML] Peptide-major histocompatibility complex class I binding prediction based on deep learning with novel feature

T Zhao, L Cheng, T Zang, Y Hu - Frontiers in Genetics, 2019 - frontiersin.org
Peptide-based vaccine development needs accurate prediction of the binding affinity
between major histocompatibility complex I (MHC I) proteins and their peptide ligands …

Combinatorial optimization of a CD4-mimetic miniprotein and cocrystal structures with HIV-1 gp120 envelope glycoprotein

F Stricher, C Huang, A Descours, S Duquesnoy… - Journal of molecular …, 2008 - Elsevier
Miniproteins provide a bridge between proteins and small molecules. Here we adapt
methods from combinatorial chemistry to optimize CD4M33, a synthetic miniprotein into …