RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences
Cellular DNA is continuously transcribed into RNA by multisubunit RNA polymerases
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …
The mechanisms of substrate selection, catalysis, and translocation by the elongating RNA polymerase
GA Belogurov, I Artsimovitch - Journal of molecular biology, 2019 - Elsevier
Multi-subunit DNA-dependent RNA polymerases synthesize all classes of cellular RNAs,
ranging from short regulatory transcripts to gigantic messenger RNAs. RNA polymerase has …
ranging from short regulatory transcripts to gigantic messenger RNAs. RNA polymerase has …
RNA polymerase backtracking in gene regulation and genome instability
E Nudler - Cell, 2012 - cell.com
RNA polymerase is a ratchet machine that oscillates between productive and backtracked
states at numerous DNA positions. Since its first description 15 years ago, backtracking—the …
states at numerous DNA positions. Since its first description 15 years ago, backtracking—the …
Mechanism of eukaryotic RNA polymerase III transcription termination
Gene expression in organisms involves many factors and is tightly controlled. Although
much is known about the initial phase of transcription by RNA polymerase III (Pol III), the …
much is known about the initial phase of transcription by RNA polymerase III (Pol III), the …
Structural basis of transcription: RNA polymerase backtracking and its reactivation
C Saint-André, M Takacs, G Papai, C Crucifix, X Guo… - Molecular cell, 2019 - cell.com
Regulatory sequences or erroneous incorporations during DNA transcription cause RNA
polymerase backtracking and inactivation in all kingdoms of life. Reactivation requires RNA …
polymerase backtracking and inactivation in all kingdoms of life. Reactivation requires RNA …
Direct assessment of transcription fidelity by high-resolution RNA sequencing
M Imashimizu, T Oshima, L Lubkowska… - Nucleic acids …, 2013 - academic.oup.com
Cancerous and aging cells have long been thought to be impacted by transcription errors
that cause genetic and epigenetic changes. Until now, a lack of methodology for directly …
that cause genetic and epigenetic changes. Until now, a lack of methodology for directly …
Structural basis of transcription elongation
FW Martinez-Rucobo, P Cramer - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
For transcription elongation, all cellular RNA polymerases form a stable elongation complex
(EC) with the DNA template and the RNA transcript. Since the millennium, a wealth of …
(EC) with the DNA template and the RNA transcript. Since the millennium, a wealth of …
The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions
S Sekine, Y Murayama, V Svetlov, E Nudler… - Molecular cell, 2015 - cell.com
Summary DNA-dependent RNA polymerase (RNAP) accomplishes multiple tasks during
transcription by assuming different structural forms. Reportedly, the" tight" form performs …
transcription by assuming different structural forms. Reportedly, the" tight" form performs …
Bacterial global regulators DksA/ppGpp increase fidelity of transcription
Collisions between paused transcription elongation complexes and replication forks
inevitably happen, which may lead to collapse of replication fork and could be detrimental to …
inevitably happen, which may lead to collapse of replication fork and could be detrimental to …
Factor‐independent transcription pausing caused by recognition of the RNA–DNA hybrid sequence
A Bochkareva, Y Yuzenkova, VR Tadigotla… - The EMBO …, 2012 - embopress.org
Pausing of transcription is an important step of regulation of gene expression in bacteria and
eukaryotes. Here we uncover a factor‐independent mechanism of transcription pausing …
eukaryotes. Here we uncover a factor‐independent mechanism of transcription pausing …