Mechanisms and consequences of double‐strand DNA break formation in chromatin
WJ Cannan, DS Pederson - Journal of cellular physiology, 2016 - Wiley Online Library
All organisms suffer double‐strand breaks (DSBs) in their DNA as a result of exposure to
ionizing radiation. DSBs can also form when replication forks encounter DNA lesions or …
ionizing radiation. DSBs can also form when replication forks encounter DNA lesions or …
Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
Excessive reactive oxygen species induce transcription-dependent replication stress
M Andrs, H Stoy, B Boleslavska, N Chappidi… - Nature …, 2023 - nature.com
Elevated levels of reactive oxygen species (ROS) reduce replication fork velocity by causing
dissociation of the TIMELESS-TIPIN complex from the replisome. Here, we show that ROS …
dissociation of the TIMELESS-TIPIN complex from the replisome. Here, we show that ROS …
[PDF][PDF] Prevalent, dynamic, and conserved R-loop structures associate with specific epigenomic signatures in mammals
R-loops are three-stranded nucleic acid structures formed upon annealing of an RNA strand
to one strand of duplex DNA. We profiled R-loops using a high-resolution, strand-specific …
to one strand of duplex DNA. We profiled R-loops using a high-resolution, strand-specific …
R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants
L Gonzalo, I Tossolini, T Gulanicz, DA Cambiagno… - Nature Plants, 2022 - nature.com
In most organisms, the maturation of nascent RNAs is coupled to transcription. Unlike in
animals, the RNA polymerase II (RNAPII) transcribes microRNA genes (MIRNA s) as long …
animals, the RNA polymerase II (RNAPII) transcribes microRNA genes (MIRNA s) as long …
[PDF][PDF] Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability
J Sollier, CT Stork, ML García-Rubio, RD Paulsen… - Molecular cell, 2014 - cell.com
R-loops, consisting of an RNA-DNA hybrid and displaced single-stranded DNA, are
physiological structures that regulate various cellular processes occurring on chromatin …
physiological structures that regulate various cellular processes occurring on chromatin …
EWS–FLI1 increases transcription to cause R-loops and block BRCA1 repair in Ewing sarcoma
Ewing sarcoma is an aggressive paediatric cancer of the bone and soft tissue. It results from
a chromosomal translocation, predominantly t (11; 22)(q24: q12), that fuses the N-terminal …
a chromosomal translocation, predominantly t (11; 22)(q24: q12), that fuses the N-terminal …
[PDF][PDF] BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair
The mechanisms contributing to transcription-associated genomic instability are both
complex and incompletely understood. Although R-loops are normal transcriptional …
complex and incompletely understood. Although R-loops are normal transcriptional …
Breaking bad: R-loops and genome integrity
J Sollier, KA Cimprich - Trends in cell biology, 2015 - cell.com
R-loops, nucleic acid structures consisting of an RNA–DNA hybrid and displaced single-
stranded (ss) DNA, are ubiquitous in organisms from bacteria to mammals. First described in …
stranded (ss) DNA, are ubiquitous in organisms from bacteria to mammals. First described in …
Mechanisms of bacterial transcription termination: all good things must end
A Ray-Soni, MJ Bellecourt… - Annual review of …, 2016 - annualreviews.org
Transcript termination is essential for accurate gene expression and the removal of RNA
polymerase (RNAP) at the ends of transcription units. In bacteria, two mechanisms are …
polymerase (RNAP) at the ends of transcription units. In bacteria, two mechanisms are …