Mechanisms and consequences of double‐strand DNA break formation in chromatin

WJ Cannan, DS Pederson - Journal of cellular physiology, 2016 - Wiley Online Library
All organisms suffer double‐strand breaks (DSBs) in their DNA as a result of exposure to
ionizing radiation. DSBs can also form when replication forks encounter DNA lesions or …

Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

Excessive reactive oxygen species induce transcription-dependent replication stress

M Andrs, H Stoy, B Boleslavska, N Chappidi… - Nature …, 2023 - nature.com
Elevated levels of reactive oxygen species (ROS) reduce replication fork velocity by causing
dissociation of the TIMELESS-TIPIN complex from the replisome. Here, we show that ROS …

[PDF][PDF] Prevalent, dynamic, and conserved R-loop structures associate with specific epigenomic signatures in mammals

LA Sanz, SR Hartono, YW Lim, S Steyaert, A Rajpurkar… - Molecular cell, 2016 - cell.com
R-loops are three-stranded nucleic acid structures formed upon annealing of an RNA strand
to one strand of duplex DNA. We profiled R-loops using a high-resolution, strand-specific …

R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants

L Gonzalo, I Tossolini, T Gulanicz, DA Cambiagno… - Nature Plants, 2022 - nature.com
In most organisms, the maturation of nascent RNAs is coupled to transcription. Unlike in
animals, the RNA polymerase II (RNAPII) transcribes microRNA genes (MIRNA s) as long …

[PDF][PDF] Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability

J Sollier, CT Stork, ML García-Rubio, RD Paulsen… - Molecular cell, 2014 - cell.com
R-loops, consisting of an RNA-DNA hybrid and displaced single-stranded DNA, are
physiological structures that regulate various cellular processes occurring on chromatin …

EWS–FLI1 increases transcription to cause R-loops and block BRCA1 repair in Ewing sarcoma

A Gorthi, JC Romero, E Loranc, L Cao, LA Lawrence… - Nature, 2018 - nature.com
Ewing sarcoma is an aggressive paediatric cancer of the bone and soft tissue. It results from
a chromosomal translocation, predominantly t (11; 22)(q24: q12), that fuses the N-terminal …

[PDF][PDF] BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair

E Hatchi, K Skourti-Stathaki, S Ventz, L Pinello, A Yen… - Molecular cell, 2015 - cell.com
The mechanisms contributing to transcription-associated genomic instability are both
complex and incompletely understood. Although R-loops are normal transcriptional …

Breaking bad: R-loops and genome integrity

J Sollier, KA Cimprich - Trends in cell biology, 2015 - cell.com
R-loops, nucleic acid structures consisting of an RNA–DNA hybrid and displaced single-
stranded (ss) DNA, are ubiquitous in organisms from bacteria to mammals. First described in …

Mechanisms of bacterial transcription termination: all good things must end

A Ray-Soni, MJ Bellecourt… - Annual review of …, 2016 - annualreviews.org
Transcript termination is essential for accurate gene expression and the removal of RNA
polymerase (RNAP) at the ends of transcription units. In bacteria, two mechanisms are …