A comparative analysis of synthetic genetic oscillators

O Purcell, NJ Savery, CS Grierson… - Journal of The …, 2010 - royalsocietypublishing.org
Synthetic biology is a rapidly expanding discipline at the interface between engineering and
biology. Much research in this area has focused on gene regulatory networks that function …

Circadian rhythms and the HPA axis: A systems view

IP Androulakis - WIREs mechanisms of disease, 2021 - Wiley Online Library
The circadian timing system comprises a network of time‐keeping clocks distributed across
a living host whose responsibility is to allocate resources and distribute functions temporally …

Coupling of growth rate and developmental tempo reduces body size heterogeneity in C. elegans

K Stojanovski, H Großhans, BD Towbin - Nature Communications, 2022 - nature.com
Animals increase by orders of magnitude in volume during development. Therefore, small
variations in growth rates among individuals could amplify to a large heterogeneity in size …

Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans

MWM Meeuse, YP Hauser… - Molecular Systems …, 2020 - embopress.org
Gene expression oscillators can structure biological events temporally and spatially.
Different biological functions benefit from distinct oscillator properties. Thus, finite …

[图书][B] Dynamics and Bifurcation in Networks: Theory and Applications of Coupled Differential Equations

M Golubitsky, I Stewart - 2023 - SIAM
The biologist JBS Haldane, when asked what we can learn about the Creator by examining
the world, is said to have replied “an inordinate fondness for beetles”[705]. Today's …

Biological switches and clocks

JJ Tyson, R Albert, A Goldbeter… - Journal of The …, 2008 - royalsocietypublishing.org
To introduce this special issue on biological switches and clocks, we review the historical
development of mathematical models of bistability and oscillations in chemical reaction …

A gene regulatory motif that generates oscillatory or multiway switch outputs

J Panovska-Griffiths, KM Page… - Journal of The Royal …, 2013 - royalsocietypublishing.org
The pattern of gene expression in a developing tissue determines the spatial organization of
cell type generation. We previously defined regulatory interactions between a set of …

[PDF][PDF] A design principle for a posttranslational biochemical oscillator

CC Jolley, KL Ode, HR Ueda - Cell reports, 2012 - cell.com
Multisite phosphorylation plays an important role in biological oscillators such as the
circadian clock. Its general role, however, has been elusive. In this theoretical study, we …

Function does not follow form in gene regulatory circuits

JL Payne, A Wagner - Scientific reports, 2015 - nature.com
Gene regulatory circuits are to the cell what arithmetic logic units are to the chip:
fundamental components of information processing that map an input onto an output. Gene …

Evolving robust gene regulatory networks

N Noman, T Monjo, P Moscato, H Iba - PloS one, 2015 - journals.plos.org
Design and implementation of robust network modules is essential for construction of
complex biological systems through hierarchical assembly of 'parts' and 'devices'. The …