Endophytic fungi: from symbiosis to secondary metabolite communications or vice versa?

B Alam, J Lǐ, Q Gě, MA Khan, J Gōng… - Frontiers in Plant …, 2021 - frontiersin.org
Endophytic fungi (EF) are a group of fascinating host-associated fungal communities that
colonize the intercellular or intracellular spaces of host tissues, providing beneficial effects to …

Mating Systems in True Morels (Morchella)

XH Du, ZL Yang - Microbiology and Molecular Biology Reviews, 2021 - Am Soc Microbiol
SUMMARY True morels (Morchella spp., Morchellaceae, Ascomycota) are widely regarded
as a highly prized delicacy and are of great economic and scientific value. Recently, the …

Inferring the direction of introgression using genomic sequence data

Y Thawornwattana, J Huang, T Flouri… - Molecular Biology …, 2023 - academic.oup.com
Genomic data are informative about the history of species divergence and interspecific gene
flow, including the direction, timing, and strength of gene flow. However, gene flow in …

Fungal evolution: cellular, genomic and metabolic complexity

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2020 - Wiley Online Library
The question of how phenotypic and genomic complexity are inter‐related and how they are
shaped through evolution is a central question in biology that historically has been …

Metabolomics and molecular simulation reveal the responding mechanism of anammox consortia to perfluorooctanoic acid by regulating metabolic network

DQ Huang, Y Wang, ZY Li, BC Huang, M Yang… - Chemical Engineering …, 2023 - Elsevier
Perfluorooctanoic acid (PFOA) is ubiquitous in aquatic environment, posing serious threats
to human health, while the potential of anaerobic ammonium oxidation (anammox) process …

Genomic biosurveillance of forest invasive alien enemies: A story written in code

RC Hamelin, AD Roe - Evolutionary Applications, 2020 - Wiley Online Library
The world's forests face unprecedented threats from invasive insects and pathogens that can
cause large irreversible damage to the ecosystems. This threatens the world's capacity to …

Inference of gene flow between species under misspecified models

J Huang, Y Thawornwattana, T Flouri… - Molecular Biology …, 2022 - academic.oup.com
Genomic sequence data provide a rich source of information about the history of species
divergence and interspecific hybridization or introgression. Despite recent advances in …

Fungal clones win the battle, but recombination wins the war

A Drenth, AR McTaggart, BD Wingfield - IMA fungus, 2019 - Springer
Clonal reproduction is common in fungi and fungal-like organisms during epidemics and
invasion events. The success of clonal fungi shaped systems for their classification and …

Megabase-scale presence-absence variation with Tripsacum origin was under selection during maize domestication and adaptation

Y Huang, W Huang, Z Meng, GT Braz, Y Li, K Wang… - Genome biology, 2021 - Springer
Abstract Background Structural variants (SVs) significantly drive genome diversity and
environmental adaptation for diverse species. Unlike the prevalent small SVs (< kilobase …

[PDF][PDF] A roadmap to understanding diversity and function of coral reef-associated fungi

A Roik, M Reverter, C Pogoreutz - FEMS Microbiology Reviews, 2022 - academic.oup.com
Tropical coral reefs are hotspots of marine productivity, owing to the association of reef-
building corals with endosymbiotic algae and metabolically diverse bacterial communities …