Imaging mRNA in vivo, from birth to death
RNA is the fundamental information transfer system in the cell. The ability to follow single
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …
Homeostasis of protein and mRNA concentrations in growing cells
J Lin, A Amir - Nature communications, 2018 - nature.com
Many experiments show that the numbers of mRNA and protein are proportional to the cell
volume in growing cells. However, models of stochastic gene expression often assume …
volume in growing cells. However, models of stochastic gene expression often assume …
Mammalian gene expression variability is explained by underlying cell state
R Foreman, R Wollman - Molecular systems biology, 2020 - embopress.org
Gene expression variability in mammalian systems plays an important role in physiological
and pathophysiological conditions. This variability can come from differential regulation …
and pathophysiological conditions. This variability can come from differential regulation …
[HTML][HTML] A post-transcriptional feedback mechanism for noise suppression and fate stabilization
MMK Hansen, WY Wen, E Ingerman, BS Razooky… - Cell, 2018 - cell.com
Diverse biological systems utilize fluctuations (" noise") in gene expression to drive lineage-
commitment decisions. However, once a commitment is made, noise becomes detrimental to …
commitment decisions. However, once a commitment is made, noise becomes detrimental to …
Silent transcription intervals and translational bursting lead to diverse phenotypic switching
X Yang, S Luo, Z Zhang, Z Wang, T Zhou… - Physical Chemistry …, 2022 - pubs.rsc.org
Gene-expression bimodality, as a potential mechanism generating phenotypic cell diversity,
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …
Disentangling intrinsic and extrinsic gene expression noise in growing cells
J Lin, A Amir - Physical review letters, 2021 - APS
Gene expression is a stochastic process. Despite the increase of protein numbers in
growing cells, the protein concentrations are often found to be confined within small ranges …
growing cells, the protein concentrations are often found to be confined within small ranges …
Macromolecular crowding induces spatial correlations that control gene expression bursting patterns
Recent superresolution microscopy studies in E. coli demonstrate that the cytoplasm has
highly variable local concentrations where macromolecular crowding plays a central role in …
highly variable local concentrations where macromolecular crowding plays a central role in …
Effects of growth rate and promoter activity on single-cell protein expression
Protein expression in a single cell depends on its global physiological state. Moreover,
genetically-identical cells exhibit variability (noise) in protein expression, arising from the …
genetically-identical cells exhibit variability (noise) in protein expression, arising from the …
Resource sharing controls gene expression bursting
PM Caveney, SE Norred, CW Chin… - ACS Synthetic …, 2017 - ACS Publications
Episodic gene expression, with periods of high expression separated by periods of no
expression, is a pervasive biological phenomenon. This bursty pattern of expression draws …
expression, is a pervasive biological phenomenon. This bursty pattern of expression draws …
The pathway to establishing HIV latency is critical to how latency is maintained and reversed
SD Rezaei, HK Lu, JJ Chang, A Rhodes… - Journal of …, 2018 - Am Soc Microbiol
ABSTRACT HIV infection requires lifelong antiretroviral therapy because of the persistence
of latently infected CD4+ T cells. The induction of virus expression from latently infected cells …
of latently infected CD4+ T cells. The induction of virus expression from latently infected cells …