Imaging mRNA in vivo, from birth to death

E Tutucci, NM Livingston, RH Singer… - Annual review of …, 2018 - annualreviews.org
RNA is the fundamental information transfer system in the cell. The ability to follow single
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …

Homeostasis of protein and mRNA concentrations in growing cells

J Lin, A Amir - Nature communications, 2018 - nature.com
Many experiments show that the numbers of mRNA and protein are proportional to the cell
volume in growing cells. However, models of stochastic gene expression often assume …

Mammalian gene expression variability is explained by underlying cell state

R Foreman, R Wollman - Molecular systems biology, 2020 - embopress.org
Gene expression variability in mammalian systems plays an important role in physiological
and pathophysiological conditions. This variability can come from differential regulation …

[HTML][HTML] A post-transcriptional feedback mechanism for noise suppression and fate stabilization

MMK Hansen, WY Wen, E Ingerman, BS Razooky… - Cell, 2018 - cell.com
Diverse biological systems utilize fluctuations (" noise") in gene expression to drive lineage-
commitment decisions. However, once a commitment is made, noise becomes detrimental to …

Silent transcription intervals and translational bursting lead to diverse phenotypic switching

X Yang, S Luo, Z Zhang, Z Wang, T Zhou… - Physical Chemistry …, 2022 - pubs.rsc.org
Gene-expression bimodality, as a potential mechanism generating phenotypic cell diversity,
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …

Disentangling intrinsic and extrinsic gene expression noise in growing cells

J Lin, A Amir - Physical review letters, 2021 - APS
Gene expression is a stochastic process. Despite the increase of protein numbers in
growing cells, the protein concentrations are often found to be confined within small ranges …

Macromolecular crowding induces spatial correlations that control gene expression bursting patterns

SE Norred, PM Caveney, G Chauhan… - ACS Synthetic …, 2018 - ACS Publications
Recent superresolution microscopy studies in E. coli demonstrate that the cytoplasm has
highly variable local concentrations where macromolecular crowding plays a central role in …

Effects of growth rate and promoter activity on single-cell protein expression

N Nordholt, J Van Heerden, R Kort, FJ Bruggeman - Scientific reports, 2017 - nature.com
Protein expression in a single cell depends on its global physiological state. Moreover,
genetically-identical cells exhibit variability (noise) in protein expression, arising from the …

Resource sharing controls gene expression bursting

PM Caveney, SE Norred, CW Chin… - ACS Synthetic …, 2017 - ACS Publications
Episodic gene expression, with periods of high expression separated by periods of no
expression, is a pervasive biological phenomenon. This bursty pattern of expression draws …

The pathway to establishing HIV latency is critical to how latency is maintained and reversed

SD Rezaei, HK Lu, JJ Chang, A Rhodes… - Journal of …, 2018 - Am Soc Microbiol
ABSTRACT HIV infection requires lifelong antiretroviral therapy because of the persistence
of latently infected CD4+ T cells. The induction of virus expression from latently infected cells …