[HTML][HTML] Plant pan-genomics: recent advances, new challenges, and roads ahead

W Li, J Liu, H Zhang, Z Liu, Y Wang, L Xing… - Journal of Genetics and …, 2022 - Elsevier
Pan-genomics can encompass most of the genetic diversity of a species or population and
has proved to be a powerful tool for studying genomic evolution and the origin and …

From single-to multi-omics: future research trends in medicinal plants

L Yang, Y Yang, L Huang, X Cui… - Briefings in bioinformatics, 2023 - academic.oup.com
Medicinal plants are the main source of natural metabolites with specialised
pharmacological activities and have been widely examined by plant researchers. Numerous …

Haplotype-phased genome unveils the butylphthalide biosynthesis and homoploid hybrid origin of Ligusticum chuanxiong

B Nie, X Chen, Z Hou, M Guo, C Li, W Sun, J Ji… - Science …, 2024 - science.org
Butylphthalide is one of the first-line drugs for ischemic stroke therapy, while no biosynthetic
enzyme for butylphthalide has been reported. Here, we present a haplotype-resolved …

Natural products of medicinal plants: biosynthesis and bioengineering in post-genomic era

L Guo, H Yao, W Chen, X Wang, P Ye, Z Xu… - Horticulture …, 2022 - academic.oup.com
Globally, medicinal plant natural products (PNPs) are a major source of substances used in
traditional and modern medicine. As we human race face the tremendous public health …

Unlocking secrets of nature's chemists: Potential of CRISPR/Cas-based tools in plant metabolic engineering for customized nutraceutical and medicinal profiles

RM Shelake, AM Jadhav, PB Bhosale… - Plant Physiology and …, 2023 - Elsevier
Plant species have evolved diverse metabolic pathways to effectively respond to internal
and external signals throughout their life cycle, allowing adaptation to their sessile and …

[HTML][HTML] Genome-Wide Analysis of Glycerol-3-Phosphate Acyltransferase (GPAT) Family in Perilla frutescens and Functional Characterization of PfGPAT9 Crucial for …

Y Zhou, X Huang, T Hu, S Chen, Y Wang, X Shi… - International Journal of …, 2023 - mdpi.com
Glycerol-3-phosphate acyltransferase (GPAT) catalyzes the first step in triacylglycerol (TAG)
biosynthesis. However, GPAT members and their functions remain poorly understood in …

A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan

K Tamura, M Sakamoto, Y Tanizawa… - DNA …, 2023 - academic.oup.com
Perilla frutescens (Lamiaceae) is an important herbal plant with hundreds of bioactive
chemicals, among which perillaldehyde and rosmarinic acid are the two major bioactive …

Genome-wide comprehensive characterization and transcriptomic analysis of AP2/ERF gene family revealed its role in seed oil and ALA formation in perilla (Perilla …

D Wu, K Zhang, C Li, GW Xie, M Lu, Y Qian, Y Shu… - Gene, 2023 - Elsevier
Perilla (Perilla frutescens) is a potential specific oilseed crop with an extremely high α-
linolenic acid (ALA) content in its seeds. AP2/ERF transcription factors (TFs) play important …

[HTML][HTML] A chromosome-level genome assembly reveals that tandem-duplicated CYP706V oxidase genes control oridonin biosynthesis in the shoot apex of Isodon …

Y Sun, J Shao, H Liu, H Wang, G Wang, J Li, Y Mao… - Molecular Plant, 2023 - cell.com
The ent-kaurenoids (eg, oridonin and enmein) from the Isodon genus (Lamiaceae) are one
class of diterpenoids with rich structural diversity and intriguing pharmaceutical activity. In …

Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium

VT Scarlett, JT Lovell, M Shao, J Phillips, S Shu… - Genetics, 2023 - academic.oup.com
The “genomic shock” hypothesis posits that unusual challenges to genome integrity such as
whole genome duplication may induce chaotic genome restructuring. Decades of research …