Molecular‐clock methods for estimating evolutionary rates and timescales

SYW Ho, S Duchêne - Molecular ecology, 2014 - Wiley Online Library
The molecular clock presents a means of estimating evolutionary rates and timescales using
genetic data. These estimates can lead to important insights into evolutionary processes and …

Bayesian molecular dating: opening up the black box

L Bromham, S Duchêne, X Hua, AM Ritchie… - Biological …, 2018 - Wiley Online Library
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …

Integrated phylogenomics and fossil data illuminate the evolution of beetles

C Cai, E Tihelka, M Giacomelli… - Royal Society …, 2022 - royalsocietypublishing.org
Beetles constitute the most biodiverse animal order with over 380 000 described species
and possibly several million more yet unnamed. Recent phylogenomic studies have arrived …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …

Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils

BE Schirrmeister, M Gugger, PCJ Donoghue - Palaeontology, 2015 - Wiley Online Library
Cyanobacteria are among the most ancient of evolutionary lineages, oxygenic
photosynthesizers that may have originated before 3.0 Ga, as evidenced by free oxygen …

Argasid and ixodid systematics: implications for soft tick evolution and systematics, with a new argasid species list

BJ Mans, J Featherston, M Kvas, KA Pillay… - Ticks and tick-borne …, 2019 - Elsevier
The systematics of the genera and subgenera within the soft tick family Argasidae is not
adequately resolved. Different classification schemes, reflecting diverse schools of scientific …

Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: primates as a test case

MD Reis, GF Gunnell, J Barba-Montoya… - Systematic …, 2018 - academic.oup.com
Primates have long been a test case for the development of phylogenetic methods for
divergence time estimation. Despite a large number of studies, however, the timing of …

Priors and posteriors in Bayesian timing of divergence analyses: the age of butterflies revisited

N Chazot, N Wahlberg, AVL Freitas, C Mitter… - Systematic …, 2019 - academic.oup.com
The need for robust estimates of times of divergence is essential for downstream analyses,
yet assessing this robustness is still rare. We generated a time-calibrated genus-level …

The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic

ILF Magalhaes, GHF Azevedo, P Michalik… - Biological …, 2020 - Wiley Online Library
Studies in evolutionary biology and biogeography increasingly rely on the estimation of
dated phylogenetic trees using molecular clocks. In turn, the calibration of such clocks is …

Consequences of secondary calibrations on divergence time estimates

JJ Schenk - PloS one, 2016 - journals.plos.org
Secondary calibrations (calibrations based on the results of previous molecular dating
studies) are commonly applied in divergence time analyses in groups that lack fossil data; …