Inference of Population Genetic Structure and High Linkage Disequilibrium Among Alternaria spp. Collected from Tomato and Potato Using Genotyping by …

TB Adhikari, BJ Knaus, NJ Grünwald, D Halterman… - bioRxiv, 2019 - biorxiv.org
Genotyping by sequencing (GBS) is considered a powerful tool to discover single nucleotide
polymorphisms (SNPs), which are useful to characterize closely related genomes of plant …

Root rot and wilting complex of red raspberry: Pathogen characterization, identifying host resistance and sustainable management options

S Sapkota - 2023 - summit.sfu.ca
Root rot and wilting complex (RRWC) of red raspberry, caused by Phytophthora rubi and
potentially other species of Phytophthora, is an economically important disease in British …

Phylogeography and Evolution of Effector Genes in Phytophthora Species

SK Shakya - 2019 - ir.library.oregonstate.edu
Plant pathogens in the genus Phytophthora are known to cause disease on field crops,
nursery plants, and forest trees. The best known example probably is Phytophthora …

[HTML][HTML] GBS analysis

JF Tabima, BJ Knaus, NJ Grünwald - grunwaldlab.github.io
This tutorial focuses on large SNP data sets such as those obtained from genotyping-by-
sequencing (GBS) for population genetic analysis in R. GBS is one of several techniques …

[PDF][PDF] Application of Target Enrichment Sequencing for Population Genetic Analyses of the Obligate Plant

JC Bello, MK Hausbeck, ML Sakalidis - 2021 - researchgate.net
Technological advances in genome sequencing have improved our ability to catalog
genomic variation and have led to an expansion of the scope and scale of genetic studies …

[PDF][PDF] AHDB Horticulture STANDARD RESEARCH REPORT

H Duncalfe - ctp-fcr.org
Background Root rot of the European red raspberry (Rubus idaeus), caused by a yet-
unknown consortium of Phytophthora species, is a recurring and destructive disease of this …

[HTML][HTML] Data sets used in this primer

VCF Reading - grunwaldlab.github.io
This data is for a population of the diploid plant pathogen Aphanomyces euteiches using
AFLP as a marker system (Grünwald & Hoheisel, 2006). A total of 187 pathogen isolates …

[PDF][PDF] From genomes to forest management–tackling invasive Phytophthora species in the era of genomics

GGM GOMEZ-GOLLEGO, JFTJF TABIMA, RR LenzR… - 2019 - academia.edu
Species of Phytophthora pose one of the most serious biosecurity threats to forest
ecosystems worldwide. Despite management efforts and increased awareness of forest …