[HTML][HTML] A new era for plant science: spatial single-cell transcriptomics

S Giacomello - Current opinion in plant biology, 2021 - Elsevier
To achieve a complete understanding of how organisms function, there is a need to study
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …

Mapping human tissues with highly multiplexed RNA in situ hybridization

K Kalhor, CJ Chen, HS Lee, M Cai, M Nafisi… - Nature …, 2024 - nature.com
In situ transcriptomic techniques promise a holistic view of tissue organization and cell-cell
interactions. There has been a surge of multiplexed RNA in situ mapping techniques but …

Spatially resolved transcriptomics in neuroscience

JL Close, BR Long, H Zeng - Nature methods, 2021 - nature.com
One major challenge in neuroscience is to gain a systematic understanding of the
extraordinary diversity of brain cell types and how they contribute to brain function. Spatially …

Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine

Y Li, L Ma, D Wu, G Chen - Briefings in Bioinformatics, 2021 - academic.oup.com
Multi-omics allows the systematic understanding of the information flow across different
omics layers, while single omics can mainly reflect one aspect of the biological system. The …

Spatial transcriptomics: technical aspects of recent developments and their applications in neuroscience and cancer research

HE Park, SH Jo, RH Lee, CP Macks, T Ku… - Advanced …, 2023 - Wiley Online Library
Spatial transcriptomics is a newly emerging field that enables high‐throughput investigation
of the spatial localization of transcripts and related analyses in various applications for …

[PDF][PDF] Upgrading the physiological relevance of human brain organoids

A Del Dosso, JP Urenda, T Nguyen, G Quadrato - Neuron, 2020 - cell.com
The recent advent of human pluripotent stem cell (PSC)-derived 3D brain organoids has
opened a window into aspects of human brain development that were not accessible before …

Pooled genetic perturbation screens with image-based phenotypes

D Feldman, L Funk, A Le, RJ Carlson, MD Leiken… - Nature protocols, 2022 - nature.com
Discovery of the genetic components underpinning fundamental and disease-related
processes is being rapidly accelerated by combining efficient, programmable genetic …

Advances in spatial transcriptomics and related data analysis strategies

J Du, YC Yang, ZJ An, MH Zhang, XH Fu… - Journal of Translational …, 2023 - Springer
Spatial transcriptomics technologies developed in recent years can provide various
information including tissue heterogeneity, which is fundamental in biological and medical …

SPASCER: spatial transcriptomics annotation at single-cell resolution

Z Fan, Y Luo, H Lu, T Wang, YZ Feng… - Nucleic Acids …, 2023 - academic.oup.com
In recent years, the explosive growth of spatial technologies has enabled the
characterization of spatial heterogeneity of tissue architectures. Compared to traditional …

Recent advances in high-throughput single-cell transcriptomics and spatial transcriptomics

X Shen, Y Zhao, Z Wang, Q Shi - Lab on a Chip, 2022 - pubs.rsc.org
Single-cell RNA sequencing (scRNA-seq) has been developed for characterizing the
transcriptome of cells that are rare but of biological significance. With cell barcoding and …