[HTML][HTML] Drug discovery with explainable artificial intelligence
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …
prediction of molecular structure and function, and automated generation of innovative …
Machine learning directed drug formulation development
Abstract Machine learning (ML) has enabled ground-breaking advances in the healthcare
and pharmaceutical sectors, from improvements in cancer diagnosis, to the identification of …
and pharmaceutical sectors, from improvements in cancer diagnosis, to the identification of …
Machine learning: new ideas and tools in environmental science and engineering
The rapid increase in both the quantity and complexity of data that are being generated daily
in the field of environmental science and engineering (ESE) demands accompanied …
in the field of environmental science and engineering (ESE) demands accompanied …
[HTML][HTML] A gentle introduction to graph neural networks
A Gentle Introduction to Graph Neural Networks Distill About Prize Submit A Gentle Introduction
to Graph Neural Networks Neural networks have been adapted to leverage the structure and …
to Graph Neural Networks Neural networks have been adapted to leverage the structure and …
[HTML][HTML] Constrained Bayesian optimization for automatic chemical design using variational autoencoders
RR Griffiths, JM Hernández-Lobato - Chemical science, 2020 - pubs.rsc.org
Automatic Chemical Design is a framework for generating novel molecules with optimized
properties. The original scheme, featuring Bayesian optimization over the latent space of a …
properties. The original scheme, featuring Bayesian optimization over the latent space of a …
Learning molecular representations for medicinal chemistry: miniperspective
KV Chuang, LM Gunsalus… - Journal of Medicinal …, 2020 - ACS Publications
The accurate modeling and prediction of small molecule properties and bioactivities depend
on the critical choice of molecular representation. Decades of informatics-driven research …
on the critical choice of molecular representation. Decades of informatics-driven research …
Multi-objective molecule generation using interpretable substructures
Drug discovery aims to find novel compounds with specified chemical property profiles. In
terms of generative modeling, the goal is to learn to sample molecules in the intersection of …
terms of generative modeling, the goal is to learn to sample molecules in the intersection of …
[PDF][PDF] Evaluating attribution for graph neural networks
Interpretability of machine learning models is critical to scientific understanding, AI safety, as
well as debugging. Attribution is one approach to interpretability, which highlights input …
well as debugging. Attribution is one approach to interpretability, which highlights input …
Impossibility theorems for feature attribution
Despite a sea of interpretability methods that can produce plausible explanations, the field
has also empirically seen many failure cases of such methods. In light of these results, it …
has also empirically seen many failure cases of such methods. In light of these results, it …
Coloring molecules with explainable artificial intelligence for preclinical relevance assessment
J Jiménez-Luna, M Skalic, N Weskamp… - Journal of Chemical …, 2021 - ACS Publications
Graph neural networks are able to solve certain drug discovery tasks such as molecular
property prediction and de novo molecule generation. However, these models are …
property prediction and de novo molecule generation. However, these models are …