Bioinformatics-assisted anti-HIV therapy

T Lengauer, T Sing - Nature Reviews Microbiology, 2006 - nature.com
Highly active antiretroviral therapy (HAART), in which three or more drugs are given in
combination, has substantially improved the clinical management of HIV-1 infection. Still, the …

Week 24 efficacy and safety of TMC114/ritonavir in treatment-experienced HIV patients

R Haubrich, D Berger, P Chiliade, A Colson, M Conant… - Aids, 2007 - journals.lww.com
Background: Agents for the treatment of HIV-1-infected patients with resistance to current
antiretroviral (ART) drugs are needed. Methods: TMC114-C202 was a randomized, partially …

Broad phenotypic cross-resistance to elvitegravir in HIV-infected patients failing on raltegravir-containing regimens

C Garrido, J Villacian, N Zahonero… - Antimicrobial agents …, 2012 - Am Soc Microbiol
The failure of raltegravir (RAL) is generally associated with the selection of mutations at
integrase position Y143, Q148, or N155. However, a relatively high proportion of failures …

Enhanced prediction of lopinavir resistance from genotype by use of artificial neural networks

D Wang, B Larder - The Journal of infectious diseases, 2003 - academic.oup.com
Our objective was to accurately predict, from complex mutation patterns, human
immunodeficiency virus type 1 resistance to the protease inhibitor lopinavir, by use of …

HIV drug resistance testing by high-multiplex “wide” sequencing on the MiSeq instrument

HR Lapointe, W Dong, GQ Lee… - Antimicrobial agents …, 2015 - Am Soc Microbiol
Limited access to HIV drug resistance testing in low-and middle-income countries impedes
clinical decision-making at the individual patient level. An efficient protocol to address this …

Analysis of the virological response with respect to baseline viral phenotype and genotype in protease inhibitor-experienced HIV-1-infected patients receiving …

DJ Kempf, JD Isaacson, MS King, SC Brun… - Antiviral …, 2002 - journals.sagepub.com
The virological response of multiple protease inhibitor-experienced, non-nucleoside reverse
transcriptase inhibitor-naive, HIV-1-infected subjects was examined with respect to baseline …

Drug resistance at low viraemia in HIV-1-infected patients with antiretroviral combination therapy

S Aleman, K Söderbärg, U Visco-Comandini, G Sitbon… - Aids, 2002 - journals.lww.com
Objective To study the appearance of drug-induced mutations at low viraemia in treated HIV-
1-infected patients. Design and methods Fourteen patients, who received their first (n= 5) …

Estimating HIV evolutionary pathways and the genetic barrier to drug resistance

N Beerenwinkel, M Däumer, T Sing… - The Journal of …, 2005 - academic.oup.com
Background The evolution of drug-resistant viruses challenges the management of human
immunodeficiency virus (HIV) infections. Understanding this evolutionary process is …

Natural variation of drug susceptibility in wild-type human immunodeficiency virus type 1

NT Parkin, NS Hellmann, JM Whitcomb… - Antimicrobial agents …, 2004 - Am Soc Microbiol
Wild-type viruses from the ViroLogic phenotype-genotype database were evaluated to
determine the upper confidence limit of the drug susceptibility distributions, or “biological …

Nelfinavir, efavirenz, or both after the failure of nucleoside treatment of HIV infection

MA Albrecht, RJ Bosch, SM Hammer… - … England Journal of …, 2001 - Mass Medical Soc
Background The optimal antiretroviral treatment for patients who have human
immunodeficiency virus (HIV) viremia despite treatment with nucleoside reverse …