LTR-retrotransposons in plants: Engines of evolution
L Galindo-González, C Mhiri, MK Deyholos… - Gene, 2017 - Elsevier
LTR retrotransposons are the most abundant group of transposable elements (TEs) in
plants. These elements can fall inside or close to genes, and therefore influence their …
plants. These elements can fall inside or close to genes, and therefore influence their …
Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …
A copia-like retrotransposon insertion in the upstream region of the SHATTERPROOF1 gene, BnSHP1.A9, is associated with quantitative variation in pod shattering …
J Liu, R Zhou, W Wang, H Wang, Y Qiu… - Journal of …, 2020 - academic.oup.com
Seed loss resulting from pod shattering is a major constraint in production of oilseed rape
(Brassica napus L.). However, the molecular mechanisms underlying pod shatter resistance …
(Brassica napus L.). However, the molecular mechanisms underlying pod shatter resistance …
A novel maize dwarf mutant generated by Ty1-copia LTR-retrotransposon insertion in Brachytic2 after spaceflight
C Li, J Tang, Z Hu, J Wang, T Yu, H Yi, M Cao - Plant cell reports, 2020 - Springer
Key message Retrotransposon insertion in Brachytic2 generated a new incomplete
recessive dwarf allele after spaceflight can moderately reduce plant height in heterozygous …
recessive dwarf allele after spaceflight can moderately reduce plant height in heterozygous …
Transcriptional activation of long terminal repeat retrotransposon sequences in the genome of pitaya under abiotic stress
Q Nie, G Qiao, L Peng, X Wen - Plant Physiology and Biochemistry, 2019 - Elsevier
Frequent somatic variations exist in pitaya (Hylocereus undatus) plants grown under abiotic
stress conditions. Long terminal repeat (LTR) retrotransposons can be activated under …
stress conditions. Long terminal repeat (LTR) retrotransposons can be activated under …
Long terminal repeats (LTR) and transcription factors regulate PHRE1 and PHRE2 activity in Moso bamboo under heat stress
Background LTR retrotransposons play a significant role in plant growth, genome evolution,
and environmental stress response, but their regulatory response to heat stress remains …
and environmental stress response, but their regulatory response to heat stress remains …
The hairless stem phenotype of cotton (Gossypium barbadense) is linked to a copia-like retrotransposon insertion in a homeodomain-leucine zipper gene (HD1)
Cotton (Gossypium) stem trichomes are mostly single cells that arise from stem epidermal
cells. In this study, a homeodomain-leucine zipper gene (HD1) was found to cosegregate …
cells. In this study, a homeodomain-leucine zipper gene (HD1) was found to cosegregate …
Characterization of active transposable elements and their new insertions in tuber propagated greater yam (Dioscorea alata)
SA Panhwar, D Wang, F Lin, Y Wang, M Liu, R Chen… - BMC genomics, 2024 - Springer
Background Greater yam is a key staple crop grown in tropical and subtropical regions,
while its asexual propagation mode had led to non-flowering mutations. How transposable …
while its asexual propagation mode had led to non-flowering mutations. How transposable …
Preferential insertion of a Ty1 LTR-retrotransposon into the A sub-genome's HD1 gene significantly correlated with the reduction in stem trichomes of tetraploid cotton
M Tang, X Wu, Y Cao, Y Qin, M Ding, Y Jiang… - Molecular Genetics and …, 2020 - Springer
Stem trichomes and seed fibers originate from epidermal cells and partially share a
regulatory pathway at the molecular level. In Gossypium barbadense, two insertions of a Ty1 …
regulatory pathway at the molecular level. In Gossypium barbadense, two insertions of a Ty1 …