Forest microbiome: diversity, complexity and dynamics

P Baldrian - FEMS Microbiology reviews, 2017 - academic.oup.com
Globally, forests represent highly productive ecosystems that act as carbon sinks where soil
organic matter is formed from residuals after biomass decomposition as well as from …

[HTML][HTML] An overview of the occurrence of ether-and ester-linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT …

JSS Damsté, WIC Rijpstra, BU Foesel, KJ Huber… - Organic …, 2018 - Elsevier
Dimethyl octacosanedioic acid (iso-diabolic acid) is a major membrane-spanning lipid of
subdivisions (SDs) 1, 3 and 4 of the Acidobacteria, a highly diverse phylum within the …

Response of soil microbial communities and microbial interactions to long-term heavy metal contamination

X Li, D Meng, J Li, H Yin, H Liu, X Liu, C Cheng… - Environmental …, 2017 - Elsevier
Due to the persistence of metals in the ecosystem and their threat to all living organisms,
effects of heavy metal on soil microbial communities were widely studied. However, little was …

Change in deep soil microbial communities due to long-term fertilization

C Li, K Yan, L Tang, Z Jia, Y Li - Soil Biology and Biochemistry, 2014 - Elsevier
Soil microbes play critical roles in ecosystem function. Although the effects of agriculture
management on microbial communities in topsoil have been well studied, few studies have …

Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau

H Chu, H Sun, BM Tripathi, JM Adams… - Environmental …, 2016 - Wiley Online Library
Many studies have investigated patterns in the near‐surface soil microbial community over
large spatial scales. However, less is known about variation in subsurface (15–30 cm of …

Metagenome-assembled genomes uncover a global brackish microbiome

LW Hugerth, J Larsson, J Alneberg, MV Lindh… - Genome biology, 2015 - Springer
Background Microbes are main drivers of biogeochemical cycles in oceans and lakes.
Although the genome is a foundation for understanding the metabolism, ecology and …

Planctomycetes in boreal and subarctic wetlands: diversity patterns and potential ecological functions

SN Dedysh, AA Ivanova - FEMS Microbiology Ecology, 2019 - academic.oup.com
Members of the phylum Planctomycetes are common inhabitants of boreal Sphagnum peat
bogs and lichen-dominated tundra wetlands. These bacteria colonize both oxic and anoxic …

Chlamydiae in the environment

A Collingro, S Köstlbacher, M Horn - Trends in Microbiology, 2020 - cell.com
Chlamydiae have been known for more than a century as major pathogens of humans. Yet
they are also found ubiquitously in the environment where they thrive within protists and in …

Planctomycetes as host-associated bacteria: a perspective that holds promise for their future isolations, by mimicking their native environmental niches in clinical …

OD Kaboré, S Godreuil, M Drancourt - Frontiers in Cellular and …, 2020 - frontiersin.org
Traditionally recognized as environmental bacteria, Planctomycetes have just been linked
recently to human pathology as opportunistic pathogens, arousing a great interest for clinical …

Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils

AA Ivanova, AD Zhelezova, TI Chernov, SN Dedysh - PloS one, 2020 - journals.plos.org
The Acidobacteria is one of the major bacterial phyla in soils and peatlands. The currently
explored diversity within this phylum is assigned to 15 class-level units, five of which contain …