[HTML][HTML] A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen

A Feurtey, C Lorrain, MC McDonald, A Milgate… - Nature …, 2023 - nature.com
Human activity impacts the evolutionary trajectories of many species worldwide. Global
trade of agricultural goods contributes to the dispersal of pathogens reshaping their genetic …

An empirical test of the estimation of historical effective population size using Drosophila melanogaster

I Novo, N Pérez‐Pereira, E Santiago… - Molecular Ecology …, 2023 - Wiley Online Library
The availability of a large number of high‐density markers (SNPs) allows the estimation of
historical effective population size (N e) from linkage disequilibrium between loci. A recent …

How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici

BA McDonald, F Suffert, A Bernasconi… - Evolutionary …, 2022 - Wiley Online Library
Pathogen populations differ in the amount of genetic diversity they contain. Populations
carrying higher genetic diversity are thought to have a greater evolutionary potential than …

[HTML][HTML] A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

U Oggenfuss, T Badet, T Wicker, FE Hartmann… - Elife, 2021 - elifesciences.org
Genome evolution is driven by the activity of transposable elements (TEs). The spread of
TEs can have deleterious effects including the destabilization of genome integrity and …

[HTML][HTML] High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging Sporothrix Species

LCML Losada, RC Monteiro, JA de Carvalho, F Hagen… - Journal of Fungi, 2023 - mdpi.com
Sporotrichosis is the main subcutaneous mycosis worldwide transmitted by animal or plant
vectors and often escalates to outbreaks or epidemics. The current cat-transmitted …

[HTML][HTML] Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen

T Badet, S Fouché, FE Hartmann, M Zala… - Nature …, 2021 - nature.com
Species harbor extensive structural variation underpinning recent adaptive evolution.
However, the causality between genomic features and the induction of new rearrangements …

[HTML][HTML] Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen

NK Singh, T Badet, L Abraham, D Croll - BMC genomics, 2021 - Springer
Background Plant pathogens cause substantial crop losses in agriculture production and
threaten food security. Plants evolved the ability to recognize virulence factors and …

Patterns of thermal adaptation in a globally distributed plant pathogen: local diversity and plasticity reveal two‐tier dynamics

AL Boixel, M Chelle, F Suffert - Ecology and Evolution, 2022 - Wiley Online Library
Plant pathogen populations inhabit patchy environments with contrasting, variable thermal
conditions. We investigated the diversity of thermal responses in populations sampled over …

The complex genomic basis of rapid convergent adaptation to pesticides across continents in a fungal plant pathogen

FE Hartmann, T Vonlanthen, NK Singh… - Molecular …, 2021 - Wiley Online Library
Convergent evolution leads to identical phenotypic traits in different species or populations.
Convergence can be driven by standing variation allowing selection to favour identical …

Optimal resistance management for mixtures of high-risk fungicides: robustness to the initial frequency of resistance and pathogen sexual reproduction

NP Taylor, NJ Cunniffe - Phytopathology®, 2023 - Am Phytopath Society
There is a strong consensus that selection for fungicide resistant pathogen strains can be
most effectively limited by using applications of mixtures of fungicides designed to balance …