[HTML][HTML] Safety by design: Biosafety and biosecurity in the age of synthetic genomics
Technologies to profoundly engineer biology are becoming increasingly affordable,
powerful, and accessible to a widening group of actors. While offering tremendous potential …
powerful, and accessible to a widening group of actors. While offering tremendous potential …
[HTML][HTML] Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets
Fungal pathogens pose a global threat to human health, with Candida albicans among the
leading killers. Systematic analysis of essential genes provides a powerful strategy to …
leading killers. Systematic analysis of essential genes provides a powerful strategy to …
Global analysis of the yeast knockout phenome
Genome-wide phenotypic screens in the budding yeast Saccharomyces cerevisiae, enabled
by its knockout collection, have produced the largest, richest, and most systematic …
by its knockout collection, have produced the largest, richest, and most systematic …
[HTML][HTML] Exploring conditional gene essentiality through systems genetics approaches in yeast
N Bosch-Guiteras, J van Leeuwen - Current Opinion in Genetics & …, 2022 - Elsevier
An essential gene encodes for a cellular function that is required for viability. Although
viability is a straightforward phenotype to analyze in yeast, defining a gene as essential is …
viability is a straightforward phenotype to analyze in yeast, defining a gene as essential is …
Copy number variation alters local and global mutational tolerance
G Avecilla, P Spealman, J Matthews, E Caudal… - Genome …, 2023 - genome.cshlp.org
Copy number variants (CNVs), duplications and deletions of genomic sequences, contribute
to evolutionary adaptation but can also confer deleterious effects and cause disease …
to evolutionary adaptation but can also confer deleterious effects and cause disease …
A Toolkit for Precise, Multigene Control in Saccharomyces cerevisiae
A Sanford, S Kiriakov, AS Khalil - ACS Synthetic Biology, 2022 - ACS Publications
Systems that allow researchers to precisely control the expression of genes are fundamental
to biological research, biotechnology, and synthetic biology. However, few inducible gene …
to biological research, biotechnology, and synthetic biology. However, few inducible gene …
[HTML][HTML] Performance evaluation of six popular short-read simulators
M Milhaven, SP Pfeifer - Heredity, 2023 - nature.com
High-throughput sequencing data enables the comprehensive study of genomes and the
variation therein. Essential for the interpretation of this genomic data is a thorough …
variation therein. Essential for the interpretation of this genomic data is a thorough …
High‐throughput metabolomics predicts drug–target relationships for eukaryotic proteins
Chemical probes are important tools for understanding biological systems. However,
because of the huge combinatorial space of targets and potential compounds, traditional …
because of the huge combinatorial space of targets and potential compounds, traditional …
[HTML][HTML] Overexpression profiling reveals cellular requirements in the context of genetic backgrounds and environments
N Saeki, C Yamamoto, Y Eguchi, T Sekito… - PLoS …, 2023 - journals.plos.org
Overexpression can help life adapt to stressful environments, making an examination of
overexpressed genes valuable for understanding stress tolerance mechanisms. However, a …
overexpressed genes valuable for understanding stress tolerance mechanisms. However, a …
[HTML][HTML] Repression of essential cell cycle genes increases cellular fitness
MM Conti, JM Ghizzoni, A Gil-Bona, W Wang… - PLoS …, 2022 - journals.plos.org
A network of transcription factors (TFs) coordinates transcription with cell cycle events in
eukaryotes. Most TFs in the network are phosphorylated by cyclin-dependent kinase (CDK) …
eukaryotes. Most TFs in the network are phosphorylated by cyclin-dependent kinase (CDK) …