Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer

S Bobisse, R Genolet, A Roberti, JL Tanyi… - Nature …, 2018 - nature.com
Immunotherapy directed against private tumor neo-antigens derived from non-synonymous
somatic mutations is a promising strategy of personalized cancer immunotherapy. However …

Genomic approaches to understanding response and resistance to immunotherapy

DA Braun, KP Burke, EM Van Allen - Clinical Cancer Research, 2016 - AACR
Immunotherapy has led to a paradigm shift in the treatment of some malignancies, providing
long-term, durable responses for patients with advanced cancers. However, such therapy …

Immunoinformatics: In Silico Approaches and Computational Design of a Multi-epitope, Immunogenic Protein

AA Bahrami, Z Payandeh, S Khalili… - International reviews …, 2019 - Taylor & Francis
Immunoinformatics is a new critical field with several tools and databases that conduct the
eyesight of experimental selection and facilitate analysis of the great amount of immunologic …

The role of neoantigen in immune checkpoint blockade therapy

M Yi, S Qin, W Zhao, S Yu, Q Chu, K Wu - Experimental hematology & …, 2018 - Springer
Immune checkpoint inhibitor induces tumor rejection by activated host immune system. The
anti-tumor immune response consists of capture, presentation, recognition of neoantigen, as …

CBFB-MYH11 fusion neoantigen enables T cell recognition and killing of acute myeloid leukemia

MA Biernacki, KA Foster, KB Woodward… - The Journal of …, 2020 - Am Soc Clin Investig
Proteins created from recurrent fusion genes like CBFB-MYH11 are prevalent in acute
myeloid leukemia (AML), often necessary for leukemogenesis, persistent throughout the …

Mass spectrometry-based antigen discovery for cancer immunotherapy

M Bassani-Sternberg, G Coukos - Current opinion in immunology, 2016 - Elsevier
Highlights•Immunopeptidomics analysis reveals the in vivo antigenic repertoire of
tumors.•Shared cancer antigens and private neo-epitopes are detected by …

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

Y Kim, J Sidney, C Pinilla, A Sette, B Peters - BMC bioinformatics, 2009 - Springer
Background Experts in peptide: MHC binding studies are often able to estimate the impact of
a single residue substitution based on a heuristic understanding of amino acid similarity in …

Durable complete response from metastatic melanoma after transfer of autologous T cells recognizing 10 mutated tumor antigens

TD Prickett, JS Crystal, CJ Cohen, A Pasetto… - Cancer immunology …, 2016 - AACR
Immunotherapy treatment of patients with metastatic cancer has assumed a prominent role
in the clinic. Durable complete response rates of 20% to 25% are achieved in patients with …

Analysis of the T Cell Response to Zika Virus and Identification of a Novel CD8+ T Cell Epitope in Immunocompetent Mice

RD Pardy, MM Rajah, SA Condotta, NG Taylor… - PLoS …, 2017 - journals.plos.org
Zika virus (ZIKV) is an emerging arbovirus of the Flaviviridae family. Although ZIKV infection
is typically mild and self-limiting in healthy adults, infection has been associated with …

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD)

GPM Mommen, CK Frese, HD Meiring… - Proceedings of the …, 2014 - National Acad Sciences
The identification of peptides presented by human leukocyte antigen (HLA) class I is
tremendously important for the understanding of antigen presentation mechanisms under …