Carbohydrate-active enzymes (CAZymes) in the gut microbiome

JF Wardman, RK Bains, P Rahfeld… - Nature Reviews …, 2022 - nature.com
The 1013–1014 microorganisms present in the human gut (collectively known as the human
gut microbiota) dedicate substantial percentages of their genomes to the degradation and …

Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature

LS McKee, SL La Rosa, B Westereng… - Environmental …, 2021 - Wiley Online Library
The Bacteroidetes phylum is renowned for its ability to degrade a wide range of complex
carbohydrates, a trait that has enabled its dominance in many diverse environments. The …

Introduction to the human gut microbiota

E Thursby, N Juge - Biochemical journal, 2017 - portlandpress.com
The human gastrointestinal (GI) tract harbours a complex and dynamic population of
microorganisms, the gut microbiota, which exert a marked influence on the host during …

[HTML][HTML] Adaptive evolution within gut microbiomes of healthy people

S Zhao, TD Lieberman, M Poyet, KM Kauffman… - Cell host & …, 2019 - cell.com
Natural selection shapes bacterial evolution in all environments. However, the extent to
which commensal bacteria diversify and adapt within the human gut remains unclear. Here …

Bacteroidetes use thousands of enzyme combinations to break down glycans

P Lapébie, V Lombard, E Drula, N Terrapon… - Nature …, 2019 - nature.com
Unlike proteins, glycan chains are not directly encoded by DNA, but by the specificity of the
enzymes that assemble them. Theoretical calculations have proposed an astronomical …

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

D Ndeh, A Rogowski, A Cartmell, AS Luis, A Baslé… - Nature, 2017 - nature.com
The metabolism of carbohydrate polymers drives microbial diversity in the human gut
microbiota. It is unclear, however, whether bacterial consortia or single organisms are …

Polysaccharide utilization loci: fueling microbial communities

JM Grondin, K Tamura, G Déjean, DW Abbott… - Journal of …, 2017 - Am Soc Microbiol
The complex carbohydrates of terrestrial and marine biomass represent a rich nutrient
source for free-living and mutualistic microbes alike. The enzymatic saccharification of these …

IgA regulates the composition and metabolic function of gut microbiota by promoting symbiosis between bacteria

A Nakajima, A Vogelzang, M Maruya… - Journal of Experimental …, 2018 - rupress.org
Immunoglobulin A (IgA) promotes health by regulating the composition and function of gut
microbiota, but the molecular requirements for such homeostatic IgA function remain …

Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

AS Luis, J Briggs, X Zhang, B Farnell, D Ndeh… - Nature …, 2018 - nature.com
The major nutrients available to human colonic Bacteroides species are glycans,
exemplified by pectins, a network of covalently linked plant cell wall polysaccharides …

[HTML][HTML] Interspecies competition impacts targeted manipulation of human gut bacteria by fiber-derived glycans

ML Patnode, ZW Beller, ND Han, J Cheng, SL Peters… - Cell, 2019 - cell.com
Development of microbiota-directed foods (MDFs) that selectively increase the abundance
of beneficial human gut microbes, and their expressed functions, requires knowledge of both …