The B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues
AM Erkelens, L Qin, B van Erp… - Nucleic Acids …, 2022 - academic.oup.com
Nucleoid-associated proteins (NAPs) play a central role in chromosome organization and
environment-responsive transcription regulation. The Bacillus subtilis-encoded NAP Rok …
environment-responsive transcription regulation. The Bacillus subtilis-encoded NAP Rok …
Specific DNA binding of archaeal histones HMfA and HMfB
AM Erkelens, B Henneman, RA Van Der Valk… - Frontiers in …, 2023 - frontiersin.org
In archaea, histones play a role in genome compaction and are involved in transcription
regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind …
regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind …
DNA-bridging by an archaeal histone variant via a unique tetramerisation interface
In eukaryotes, histone paralogues form obligate heterodimers such as H3/H4 and H2A/H2B
that assemble into octameric nucleosome particles. Archaeal histones are dimeric and …
that assemble into octameric nucleosome particles. Archaeal histones are dimeric and …
Mechanical and structural properties of archaeal hypernucleosomes
B Henneman, TB Brouwer, AM Erkelens… - Nucleic Acids …, 2021 - academic.oup.com
Many archaea express histones, which organize the genome and play a key role in gene
regulation. The structure and function of archaeal histone–DNA complexes remain however …
regulation. The structure and function of archaeal histone–DNA complexes remain however …
Dynamic human MutSα–MutLα complexes compact mismatched DNA
KC Bradford, H Wilkins, P Hao, ZM Li… - Proceedings of the …, 2020 - National Acad Sciences
DNA mismatch repair (MMR) corrects errors that occur during DNA replication. In humans,
mutations in the proteins MutSα and MutLα that initiate MMR cause Lynch syndrome, the …
mutations in the proteins MutSα and MutLα that initiate MMR cause Lynch syndrome, the …
Quantitative determination of DNA bridging efficiency of chromatin proteins
RA van der Valk, L Qin, GF Moolenaar… - … Chromatin: Methods and …, 2018 - Springer
DNA looping is important for genome organization in all domains of life. The basis of DNA
loop formation is the bridging of two separate DNA double helices. Detecting DNA bridge …
loop formation is the bridging of two separate DNA double helices. Detecting DNA bridge …
[PDF][PDF] Multiplexed nanometric 3D tracking of microbeads using an FFT-phasor algorithm
TB Brouwer, N Hermans, J van Noort - Biophysical Journal, 2020 - cell.com
Many single-molecule biophysical techniques rely on nanometric tracking of microbeads to
obtain quantitative information about the mechanical properties of biomolecules such as …
obtain quantitative information about the mechanical properties of biomolecules such as …
System-Wide Analysis of the GATC-Binding Nucleoid-Associated Protein Gbn and Its Impact on Streptomyces Development
Bacterial chromosome structure is, to a great extent, organized by a diverse group of
proteins collectively referred to as nucleoid-associated proteins (NAPs). Many NAPs have …
proteins collectively referred to as nucleoid-associated proteins (NAPs). Many NAPs have …
The B. subtilis Rok protein compacts and organizes DNA by bridging
L Qin, AM Erkelens, D Markus, RT Dame - bioRxiv, 2019 - biorxiv.org
Rok from Bacillus subtilis is an abundant DNA binding protein similar in function to H-NS-
like proteins found in many proteobacteria. Rok binds across the genome with a preference …
like proteins found in many proteobacteria. Rok binds across the genome with a preference …
Mismatch Matchmaking: Single Molecule Insights into DNA Mismatch Repair Signaling
WH Wilkins - 2022 - search.proquest.com
Abstract DNA Mismatch Repair (MMR) is a universally conserved system that recognizes
errors made during the replication process, such as base-base mismatches and insertions …
errors made during the replication process, such as base-base mismatches and insertions …