[HTML][HTML] Protein data bank: a comprehensive review of 3D structure holdings and worldwide utilization by researchers, educators, and students

SK Burley, HM Berman, JM Duarte, Z Feng, JW Flatt… - Biomolecules, 2022 - mdpi.com
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB),
funded by the United States National Science Foundation, National Institutes of Health, and …

RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from …

SK Burley, C Bhikadiya, C Bi, S Bittrich… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …

[HTML][HTML] Metagenomics: a path to understanding the gut microbiome

S Yen, JS Johnson - Mammalian Genome, 2021 - Springer
The gut microbiome is a major determinant of host health, yet it is only in the last 2 decades
that the advent of next-generation sequencing has enabled it to be studied at a genomic …

[HTML][HTML] Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque

A Fernández-Torras, M Duran-Frigola, M Bertoni… - Nature …, 2022 - nature.com
Biomedical data is accumulating at a fast pace and integrating it into a unified framework is a
major challenge, so that multiple views of a given biological event can be considered …

Identification of different side effects between PARP inhibitors and their polypharmacological multi‐target rationale

D Sandhu, AA Antolin, AR Cox… - British journal of clinical …, 2022 - Wiley Online Library
Aims The aim of this study was to determine the differences and potential mechanistic
rationale for observed adverse drug reactions (ADRs) between four approved PARP …

Building structural models of a whole mycoplasma cell

M Maritan, L Autin, J Karr, MW Covert, AJ Olson… - Journal of molecular …, 2022 - Elsevier
Building structural models of entire cells has been a long-standing cross-discipline
challenge for the research community, as it requires an unprecedented level of integration …

[HTML][HTML] Biological control and plant growth promotion properties of Streptomyces albidoflavus St-220 isolated from Salvia miltiorrhiza rhizosphere

Y Du, T Wang, J Jiang, Y Wang, C Lv, K Sun… - Frontiers in Plant …, 2022 - frontiersin.org
Root rot disease caused by Fusarium oxysporum is a devastating disease of Salvia
miltiorrhiza and dramatically affected the production and quality of Sa. miltiorrhiza. Besides …

Development of interactive biological web applications with R/Shiny

L Jia, W Yao, Y Jiang, Y Li, Z Wang, H Li… - Briefings in …, 2022 - academic.oup.com
Abstract Development of interactive web applications to deposit, visualize and analyze
biological datasets is a major subject of bioinformatics. R is a programming language for …

Bioinformatics approaches and big data analytics opportunities in improving fisheries and aquaculture

MA Rather, D Agarwal, TA Bhat, IA Khan, I Zafar… - International Journal of …, 2023 - Elsevier
Aquaculture has witnessed an excellent growth rate during the last two decades and offers
huge potential to provide nutritional as well as livelihood security. Genomic research has …

[HTML][HTML] Bioinformatic tools for the analysis and prediction of ncRNA interactions

A Rincón-Riveros, D Morales, JA Rodríguez… - International Journal of …, 2021 - mdpi.com
Noncoding RNAs (ncRNAs) play prominent roles in the regulation of gene expression via
their interactions with other biological molecules such as proteins and nucleic acids …