Proksee: in-depth characterization and visualization of bacterial genomes
JR Grant, E Enns, E Marinier, A Mandal… - Nucleic acids …, 2023 - academic.oup.com
Abstract Proksee (https://proksee. ca) provides users with a powerful, easy-to-use, and
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
feature-rich system for assembling, annotating, analysing, and visualizing bacterial …
[HTML][HTML] Identification of mobile genetic elements with geNomad
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …
understanding their diversity, ecology, biotechnological applications and impact on public …
[HTML][HTML] Prokaryotic Argonautes for in vivo biotechnology and molecular diagnostics
BA Graver, N Chakravarty, KV Solomon - Trends in Biotechnology, 2024 - cell.com
Prokaryotic Argonautes (pAgos) are an emerging class of programmable endonucleases
that are believed to be more flexible than existing CRISPR–Cas systems and have …
that are believed to be more flexible than existing CRISPR–Cas systems and have …
[HTML][HTML] Lachnospiraceae are emerging industrial biocatalysts and biotherapeutics
T Zaplana, S Miele, AC Tolonen - Frontiers in Bioengineering and …, 2024 - frontiersin.org
The Lachnospiraceae is a family of anaerobic bacteria in the class Clostridia with potential
to advance the bio-economy and intestinal therapeutics. Some species of Lachnospiraceae …
to advance the bio-economy and intestinal therapeutics. Some species of Lachnospiraceae …
<? mode longmeta?> IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
Plasmids are mobile genetic elements found in many clades of Archaea and Bacteria. They
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
Bacteria conjugate ubiquitin-like proteins to interfere with phage assembly
Several immune pathways in humans conjugate ubiquitin-like proteins to virus and host
molecules as a means of antiviral defence,,,–. Here we studied an antiphage defence …
molecules as a means of antiviral defence,,,–. Here we studied an antiphage defence …
The Vibrio cholerae CBASS phage defence system modulates resistance and killing by antifolate antibiotics
S Brenzinger, M Airoldi, AJ Ogunleye, K Jugovic… - Nature …, 2024 - nature.com
Toxic bacterial modules such as toxin–antitoxin systems hold antimicrobial potential, though
successful applications are rare. Here we show that in Vibrio cholerae the cyclic …
successful applications are rare. Here we show that in Vibrio cholerae the cyclic …
Sulfoquinovose is a widespread organosulfur substrate for Roseobacter clade bacteria in the ocean
L Liu, X Chen, J Ye, X Ma, Y Han, Y He… - The ISME …, 2023 - academic.oup.com
Sulfoquinovose (SQ) is one of the most abundant organosulfur compounds in the biosphere,
and its biosynthesis and degradation can represent an important contribution to the sulfur …
and its biosynthesis and degradation can represent an important contribution to the sulfur …
[HTML][HTML] Plant myo-inositol transport influences bacterial colonization phenotypes
BS O'Banion, P Jones, AA Demetros, BR Kelley… - Current Biology, 2023 - cell.com
Plant microbiomes are assembled and modified through a complex milieu of biotic and
abiotic factors. Despite dynamic and fluctuating contributing variables, specific host …
abiotic factors. Despite dynamic and fluctuating contributing variables, specific host …
[HTML][HTML] Phylogenomics and genetic analysis of solvent-producing Clostridium species
The genus Clostridium is a large and diverse group within the Bacillota (formerly Firmicutes),
whose members can encode useful complex traits such as solvent production, gas …
whose members can encode useful complex traits such as solvent production, gas …