Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

[HTML][HTML] Current insight into traditional and modern methods in fungal diversity estimates

AK Gautam, RK Verma, S Avasthi, Sushma, Y Bohra… - Journal of Fungi, 2022 - mdpi.com
Fungi are an important and diverse component in various ecosystems. The methods to
identify different fungi are an important step in any mycological study. Classical methods of …

[HTML][HTML] Regional-scale in-depth analysis of soil fungal diversity reveals strong pH and plant species effects in Northern Europe

L Tedersoo, S Anslan, M Bahram, R Drenkhan… - Frontiers in …, 2020 - frontiersin.org
Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-
up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots …

[HTML][HTML] GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

T Větrovský, D Morais, P Kohout, C Lepinay, C Algora… - Scientific Data, 2020 - nature.com
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …

Contrasting patterns and drivers of soil bacterial and fungal diversity across a mountain gradient

C Shen, A Gunina, Y Luo, J Wang, JZ He… - Environmental …, 2020 - Wiley Online Library
Microbial elevational diversity patterns have been extensively studied, but their shaping
mechanisms remain to be explored. Here, we examined soil bacterial and fungal diversity …

Tree species identity surpasses richness in affecting soil microbial richness and community composition in subtropical forests

L Chen, W Xiang, H Wu, S Ouyang, B Zhou… - Soil Biology and …, 2019 - Elsevier
Plant interactions and feedbacks with soil microorganisms play an important role in
sustaining the functions and stability of terrestrial ecosystems, yet the effects of tree species …

Decoupled diversity patterns in bacteria and fungi across continental forest ecosystems

S Liu, H Wang, P Tian, X Yao, H Sun, Q Wang… - Soil Biology and …, 2020 - Elsevier
Recent evidence showed that bacteria and fungi appear to have different latitudinal diversity
gradients at the global scale. However, the ecological drivers explaining these decoupled …

High‐throughput identification and diagnostics of pathogens and pests: overview and practical recommendations

L Tedersoo, R Drenkhan, S Anslan… - Molecular ecology …, 2019 - Wiley Online Library
High‐throughput identification technologies provide efficient tools for understanding the
ecology and functioning of microorganisms. Yet, these methods have been only rarely used …

Distinct mechanisms shape soil bacterial and fungal co-occurrence networks in a mountain ecosystem

J Li, C Li, Y Kou, M Yao, Z He, X Li - FEMS Microbiology Ecology, 2020 - academic.oup.com
Understanding microbial network assembly is a promising way to predict potential impacts of
environmental changes on ecosystem functions. Yet, soil microbial network assembly in …

Tree mycorrhizal type and tree diversity shape the forest soil microbiota

B Singavarapu, R Beugnon… - Environmental …, 2022 - Wiley Online Library
There is limited knowledge on how the association of trees with different mycorrhizal types
shapes soil microbial communities in the context of changing tree diversity levels. We used …