Plant pan-genomes are the new reference

PE Bayer, AA Golicz, A Scheben, J Batley, D Edwards - Nature plants, 2020 - nature.com
Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …

[HTML][HTML] Impact of polyploidy on plant tolerance to abiotic and biotic stresses

VE Tossi, LJ Martínez Tosar, LE Laino… - Frontiers in Plant …, 2022 - frontiersin.org
Polyploidy, defined as the coexistence of three or more complete sets of chromosomes in an
organism's cells, is considered as a pivotal moving force in the evolutionary history of …

The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation

JA Birchler, H Yang - The Plant Cell, 2022 - academic.oup.com
Gene duplications have long been recognized as a contributor to the evolution of genes with
new functions. Multiple copies of genes can result from tandem duplication, from …

The transcriptional landscape of polyploid wheat

RH Ramírez-González, P Borrill, D Lang… - Science, 2018 - science.org
INTRODUCTION Polyploidy, arising from whole-genome duplication or interspecific
hybridization, is ubiquitous across the plant and fungal kingdoms. The presence of highly …

[HTML][HTML] Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

[HTML][HTML] Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

X Cai, L Chang, T Zhang, H Chen, L Zhang, R Lin… - Genome biology, 2021 - Springer
Background Despite the prevalence and recurrence of polyploidization in the speciation of
flowering plants, its impacts on crop intraspecific genome diversification are largely …

Gene retention, fractionation and subgenome differences in polyploid plants

F Cheng, J Wu, X Cai, J Liang, M Freeling, X Wang - Nature plants, 2018 - nature.com
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …

Patterns and processes of diploidization in land plants

Z Li, MTW McKibben, GS Finch… - Annual review of …, 2021 - annualreviews.org
Most land plants are now known to be ancient polyploids that have rediploidized.
Diploidization involves many changes in genome organization that ultimately restore …

On the road to breeding 4.0: unraveling the good, the bad, and the boring of crop quantitative genomics

JG Wallace, E Rodgers-Melnick… - Annual review of …, 2018 - annualreviews.org
Understanding the quantitative genetics of crops has been and will continue to be central to
maintaining and improving global food security. We outline four stages that plant breeding …

Exploiting induced and natural epigenetic variation for crop improvement

NM Springer, RJ Schmitz - Nature reviews genetics, 2017 - nature.com
Plant breeding has traditionally relied on combining the genetic diversity present within a
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …