Genomics and Artificial Intelligence: Prostate Cancer

EY Wong, TN Chu, SS Ladi-Seyedian - Urologic Clinics, 2023 - urologic.theclinics.com
Management of patients with prostate cancer (PCa) is often challenging due to the
difference in the biology of cancer between patients and the various genetic alterations …

[HTML][HTML] Prediction of biochemical recurrence-free survival of prostate cancer patients leveraging multiple gene expression profiles in tumor microenvironment

R Zhou, Y Feng, J Ye, Z Han, Y Liang, Q Chen… - Frontiers in …, 2021 - frontiersin.org
Tumor-adjacent normal (TAN) tissues, which constitute tumor microenvironment and are
different from healthy tissues, provide critical information at molecular levels that can be …

Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer

C Schimmelpfennig, M Rade, S Füssel, D Löffler… - BMC cancer, 2023 - Springer
Abstract Background Prostate cancer (PCa) is one of the most prevalent cancers worldwide.
The clinical manifestations and molecular characteristics of PCa are highly variable …

[HTML][HTML] A prognostic signature consisting of N6-methyladenosine modified mRNAs demonstrates clinical potential in prediction of biochemical recurrence and …

J Lu, J Chen, Z Lin, Q Liu, C Zhong, Z Cai, Z Jia… - Translational …, 2023 - Elsevier
Novel biomarkers are urgently needed to improve the prediction of clinical outcomes and
guide personalized treatment for prostate cancer (PCa) patients. However, the role of N6 …

PCaDB-a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts

R Li, J Zhu, WD Zhong, Z Jia - BioRxiv, 2021 - biorxiv.org
Prostate cancer (PCa) is a heterogeneous disease with highly variable clinical outcomes
which presents enormous challenges in the clinical management. A vast amount of …

Identification of a 9-gene signature to enhance biochemical recurrence prediction in primary prostate cancer: A benchmarking study using ten machine learning …

W Yin, G Chen, Y Li, R Li, Z Jia, C Zhong, S Wang… - Cancer Letters, 2024 - Elsevier
Prostate cancer (PCa) is a prevalent malignancy among men worldwide, and biochemical
recurrence (BCR) after radical prostatectomy (RP) is a critical turning point commonly used …

A reliable transcriptomic risk-score applicable to formalin-fixed paraffin-embedded biopsies improves outcome prediction in localized prostate cancer

M Rade, M Kreuz, A Borkowetz, U Sommer… - Molecular …, 2024 - Springer
Background Clinical manifestation of prostate cancer (PCa) is highly variable. Aggressive
tumors require radical treatment while clinically non-significant ones may be suitable for …

N6-methyladenosine modified lncRNAs signature for stratification of biochemical recurrence in prostate cancer

Y Liang, W Yin, Z Cai, H Luo, Q Liu, C Zhong, J Chen… - Human Genetics, 2023 - Springer
Nonmutational epigenetic reprogramming is a crucial mechanism contributing to the
pronounced heterogeneity of prostate cancer (PCa). Among these mechanisms, N6 …

[HTML][HTML] Development of interpretable machine learning models associated with environmental chemicals to predict all-cause and specific-cause mortality: A …

S Duan, Y Wu, J Zhu, X Wang, Y Zhang, C Gu… - Ecotoxicology and …, 2024 - Elsevier
Limited information is available on potential predictive value of environmental chemicals for
mortality. Our study aimed to investigate the associations between 43 of 8 classes …

Identification of Two Flip-Over Genes in Grass Family as Potential Signature of C4 Photosynthesis Evolution

C Wu, D Guo - International Journal of Molecular Sciences, 2023 - mdpi.com
In flowering plants, C4 photosynthesis is superior to C3 type in carbon fixation efficiency and
adaptation to extreme environmental conditions, but the mechanisms behind the assembly …