Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

Lessons learned and unlearned in periodontal microbiology

R Teles, F Teles, J Frias‐Lopez, B Paster… - Periodontology …, 2013 - Wiley Online Library
Periodontal diseases are initiated by bacterial species living in polymicrobial biofilms at or
below the gingival margin and progress largely as a result of the inflammation elicited by …

Microbial genomic taxonomy.

CC Thompson, L Vidal, V Salazar… - Trends in the …, 2021 - cabidigitallibrary.org
This book chapter argues for an open-access catalogue of taxonomic descriptions with
prototypes; diagnostic tables; and links to culture collections, to genome and gene …

Environmental impacts of genetically modified plants: a review

AM Tsatsakis, MA Nawaz, D Kouretas, G Balias… - Environmental …, 2017 - Elsevier
Powerful scientific techniques have caused dramatic expansion of genetically modified
crops leading to altered agricultural practices posing direct and indirect environmental …

[图书][B] The tangled tree: a radical new history of life

D Quammen - 2018 - books.google.com
In this New York Times bestseller and longlist nominee for the National Book Award,“our
greatest living chronicler of the natural world”(The New York Times), David Quammen …

Stochastic developmental variation, an epigenetic source of phenotypic diversity with far-reaching biological consequences

G Vogt - Journal of Biosciences, 2015 - Springer
This article reviews the production of different phenotypes from the same genotype in the
same environment by stochastic cellular events, nonlinear mechanisms during patterning …

[HTML][HTML] Hidden diversity in honey bee gut symbionts detected by single-cell genomics

P Engel, R Stepanauskas, NA Moran - PLoS genetics, 2014 - journals.plos.org
Microbial communities in animal guts are composed of diverse, specialized bacterial
species, but little is known about how gut bacteria diversify to produce genetically and …

Biological species are universal across life's domains

LM Bobay, H Ochman - Genome Biology and Evolution, 2017 - academic.oup.com
Delineation of species is fundamental to organizing and understanding biological diversity.
The most widely applied criterion for distinguishing species is the Biological Species …

[PDF][PDF] Escherichia Coli: What Is and Which Are?

M Cobo-Simón, R Hart, H Ochman - Molecular Biology and …, 2023 - academic.oup.com
Escherichia coli have served as important model organisms for over a century—used to
elucidate key aspects of genetics, evolution, molecular biology, and pathogenesis. However …

[HTML][HTML] Genomic taxonomy of vibrios

CC Thompson, ACP Vicente, RC Souza… - BMC Evolutionary …, 2009 - Springer
Background Vibrio taxonomy has been based on a polyphasic approach. In this study, we
retrieve useful taxonomic information (ie data that can be used to distinguish different …