[HTML][HTML] Challenges and opportunities for global genomic surveillance strategies in the COVID-19 era

T Ling-Hu, E Rios-Guzman, R Lorenzo-Redondo… - Viruses, 2022 - mdpi.com
Global SARS-CoV-2 genomic surveillance efforts have provided critical data on the ongoing
evolution of the virus to inform best practices in clinical care and public health throughout the …

Assessment of SARS-CoV-2 genome sequencing: quality criteria and low-frequency variants

D Jacot, T Pillonel, G Greub… - Journal of Clinical …, 2021 - Am Soc Microbiol
Although many laboratories worldwide have developed their sequencing capacities in
response to the need for SARS-CoV-2 genome-based surveillance of variants, only a few …

[HTML][HTML] Decreased fetal movements: a sign of placental SARS-CoV-2 infection with perinatal brain injury

G Favre, S Mazzetti, C Gengler, C Bertelli, J Schneider… - Viruses, 2021 - mdpi.com
Neonatal COVID-19 is rare and mainly results from postnatal transmission. Severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), however, can infect the placenta and …

[HTML][HTML] In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

F Palma, I Mangone, A Janowicz, A Moura… - BMC genomics, 2022 - Springer
Background Whole genome sequencing analyzed by core genome multi-locus sequence
typing (cgMLST) is widely used in surveillance of the pathogenic bacteria Listeria …

[HTML][HTML] Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection

CH Wong, CY Ngan, RL Goldfeder, J Idol… - Communications …, 2021 - nature.com
Background It is estimated that up to 80% of infections caused by severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) are asymptomatic and asymptomatic patients can …

[HTML][HTML] Minimal requirements for ISO15189 validation and accreditation of three next generation sequencing procedures for SARS-CoV-2 surveillance in clinical …

C Maschietto, G Otto, P Rouzé, N Debortoli, B Bihin… - Scientific reports, 2023 - nature.com
Rapid and recurrent breakthroughs of new SARS-CoV-2 strains (variants) have prompted
public health authorities worldwide to set up surveillance networks to monitor the circulation …

Sensitivity of detection and variant typing of SARS-CoV-2 in European laboratories

R Mögling, C Fischer, KR Stanoeva… - Journal of Clinical …, 2022 - Am Soc Microbiol
The molecular detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
is key for clinical management and surveillance. Funded by the European Centre for …

[HTML][HTML] Genomic surveillance of SARS-CoV-2 in Puerto Rico enabled early detection and tracking of variants

GA Santiago, B Flores, GL González… - Communications …, 2022 - nature.com
Abstract Background Puerto Rico has experienced the full impact of the COVID-19
pandemic. Since SARS-CoV-2, the virus that causes COVID-19, was first detected on the …

[HTML][HTML] Predominance of the SARS-CoV-2 lineage P. 1 and its sublineage P. 1.2 in patients from the metropolitan region of Porto Alegre, Southern Brazil in March …

VB Franceschi, GD Caldana, C Perin, A Horn, C Peter… - Pathogens, 2021 - mdpi.com
Almost a year after the COVID-19 pandemic had begun, new lineages (B. 1.1. 7, B. 1.351, P.
1, and B. 1.617. 2) associated with enhanced transmissibility, immunity evasion, and …

[HTML][HTML] Mutation profile of SARS-CoV-2 genome in a sample from the first year of the pandemic in Colombia

JM Gálvez, HM Chaparro-Solano… - Infection, Genetics and …, 2022 - Elsevier
The severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) is the
etiopathogenic agent of COVID-19, a condition that has led to a formally recognized …