Understanding carbon catabolite repression in Escherichia coli using quantitative models
Carbon catabolite repression (CCR) controls the order in which different carbon sources are
metabolized. Although this system is one of the paradigms of the regulation of gene …
metabolized. Although this system is one of the paradigms of the regulation of gene …
Coordination of bacterial proteome with metabolism by cyclic AMP signalling
The cyclic AMP (cAMP)-dependent catabolite repression effect in Escherichia coli is among
the most intensely studied regulatory processes in biology. However, the physiological …
the most intensely studied regulatory processes in biology. However, the physiological …
Metabolic control of persister formation in Escherichia coli
SM Amato, MA Orman, MP Brynildsen - Molecular cell, 2013 - cell.com
Bacterial persisters are phenotypic variants that form from the action of stress response
pathways triggering toxin-mediated antibiotic tolerance. Although persisters form during …
pathways triggering toxin-mediated antibiotic tolerance. Although persisters form during …
Mathematical modelling of microbes: metabolism, gene expression and growth
H De Jong, S Casagranda… - Journal of The …, 2017 - royalsocietypublishing.org
The growth of microorganisms involves the conversion of nutrients in the environment into
biomass, mostly proteins and other macromolecules. This conversion is accomplished by …
biomass, mostly proteins and other macromolecules. This conversion is accomplished by …
Growth strategy of microbes on mixed carbon sources
A classic problem in microbiology is that bacteria display two types of growth behavior when
cultured on a mixture of two carbon sources: the two sources are sequentially consumed …
cultured on a mixture of two carbon sources: the two sources are sequentially consumed …
Rapid identification of bacteria with a disposable colorimetric sensing array
JR Carey, KS Suslick, KI Hulkower… - Journal of the …, 2011 - ACS Publications
Rapid identification of both species and even specific strains of human pathogenic bacteria
grown on standard agar has been achieved from the volatiles they produce using a …
grown on standard agar has been achieved from the volatiles they produce using a …
The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate
Bi-phasic or diauxic growth is often observed when microbes are grown in a chemically
defined medium containing two sugars (for example glucose and lactose). Typically, the two …
defined medium containing two sugars (for example glucose and lactose). Typically, the two …
Diauxie and co-utilization of carbon sources can coexist during bacterial growth in nutritionally complex environments
E Perrin, V Ghini, M Giovannini, F Di Patti… - Nature …, 2020 - nature.com
It is commonly thought that when multiple carbon sources are available, bacteria metabolize
them either sequentially (diauxic growth) or simultaneously (co-utilization). However, this …
them either sequentially (diauxic growth) or simultaneously (co-utilization). However, this …
Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli
Many microorganisms exhibit nutrient preferences, exemplified by the 'hierarchical'
consumption of certain carbon substrates. Here, we systematically investigate under which …
consumption of certain carbon substrates. Here, we systematically investigate under which …
Nutrient Transitions Are a Source of Persisters in Escherichia coli Biofilms
SM Amato, MP Brynildsen - PloS one, 2014 - journals.plos.org
Chronic and recurrent infections have been attributed to persisters in biofilms, and despite
this importance, the mechanisms of persister formation in biofilms remain unclear. The …
this importance, the mechanisms of persister formation in biofilms remain unclear. The …