Understanding carbon catabolite repression in Escherichia coli using quantitative models

A Kremling, J Geiselmann, D Ropers, H de Jong - Trends in microbiology, 2015 - cell.com
Carbon catabolite repression (CCR) controls the order in which different carbon sources are
metabolized. Although this system is one of the paradigms of the regulation of gene …

Coordination of bacterial proteome with metabolism by cyclic AMP signalling

C You, H Okano, S Hui, Z Zhang, M Kim… - Nature, 2013 - nature.com
The cyclic AMP (cAMP)-dependent catabolite repression effect in Escherichia coli is among
the most intensely studied regulatory processes in biology. However, the physiological …

Metabolic control of persister formation in Escherichia coli

SM Amato, MA Orman, MP Brynildsen - Molecular cell, 2013 - cell.com
Bacterial persisters are phenotypic variants that form from the action of stress response
pathways triggering toxin-mediated antibiotic tolerance. Although persisters form during …

Mathematical modelling of microbes: metabolism, gene expression and growth

H De Jong, S Casagranda… - Journal of The …, 2017 - royalsocietypublishing.org
The growth of microorganisms involves the conversion of nutrients in the environment into
biomass, mostly proteins and other macromolecules. This conversion is accomplished by …

Growth strategy of microbes on mixed carbon sources

X Wang, K Xia, X Yang, C Tang - Nature communications, 2019 - nature.com
A classic problem in microbiology is that bacteria display two types of growth behavior when
cultured on a mixture of two carbon sources: the two sources are sequentially consumed …

Rapid identification of bacteria with a disposable colorimetric sensing array

JR Carey, KS Suslick, KI Hulkower… - Journal of the …, 2011 - ACS Publications
Rapid identification of both species and even specific strains of human pathogenic bacteria
grown on standard agar has been achieved from the volatiles they produce using a …

The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate

D Chu, DJ Barnes - Scientific reports, 2016 - nature.com
Bi-phasic or diauxic growth is often observed when microbes are grown in a chemically
defined medium containing two sugars (for example glucose and lactose). Typically, the two …

Diauxie and co-utilization of carbon sources can coexist during bacterial growth in nutritionally complex environments

E Perrin, V Ghini, M Giovannini, F Di Patti… - Nature …, 2020 - nature.com
It is commonly thought that when multiple carbon sources are available, bacteria metabolize
them either sequentially (diauxic growth) or simultaneously (co-utilization). However, this …

Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli

H Okano, R Hermsen, K Kochanowski, T Hwa - Nature microbiology, 2020 - nature.com
Many microorganisms exhibit nutrient preferences, exemplified by the 'hierarchical'
consumption of certain carbon substrates. Here, we systematically investigate under which …

Nutrient Transitions Are a Source of Persisters in Escherichia coli Biofilms

SM Amato, MP Brynildsen - PloS one, 2014 - journals.plos.org
Chronic and recurrent infections have been attributed to persisters in biofilms, and despite
this importance, the mechanisms of persister formation in biofilms remain unclear. The …