Methods for copy number aberration detection from single-cell DNA-sequencing data
Copy number aberrations (CNAs), which are pathogenic copy number variations (CNVs),
play an important role in the initiation and progression of cancer. Single-cell DNA …
play an important role in the initiation and progression of cancer. Single-cell DNA …
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
Microscopy image analysis is a major bottleneck in quantification of single-cell microscopy
data, typically requiring human oversight and curation, which limit both accuracy and …
data, typically requiring human oversight and curation, which limit both accuracy and …
Graph-based change-point analysis
H Chen, L Chu - Annual Review of Statistics and Its Application, 2023 - annualreviews.org
Recent technological advances allow for the collection of massive data in the study of
complex phenomena over time and/or space in various fields. Many of these data involve …
complex phenomena over time and/or space in various fields. Many of these data involve …
High dimensional change point estimation via sparse projection
T Wang, RJ Samworth - Journal of the Royal Statistical Society …, 2018 - academic.oup.com
Change points are a very common feature of 'big data'that arrive in the form of a data stream.
We study high dimensional time series in which, at certain time points, the mean structure …
We study high dimensional time series in which, at certain time points, the mean structure …
Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
G Nilsen, K Liestøl, P Van Loo, HK Moen Vollan… - BMC genomics, 2012 - Springer
Background Cancer progression is associated with genomic instability and an accumulation
of gains and losses of DNA. The growing variety of tools for measuring genomic copy …
of gains and losses of DNA. The growing variety of tools for measuring genomic copy …
On optimal multiple changepoint algorithms for large data
Many common approaches to detecting changepoints, for example based on statistical
criteria such as penalised likelihood or minimum description length, can be formulated in …
criteria such as penalised likelihood or minimum description length, can be formulated in …
CODEX: a normalization and copy number variation detection method for whole exome sequencing
High-throughput sequencing of DNA coding regions has become a common way of
assaying genomic variation in the study of human diseases. Copy number variation (CNV) is …
assaying genomic variation in the study of human diseases. Copy number variation (CNV) is …
Change-point detection in panel data via double CUSUM statistic
H Cho - 2016 - projecteuclid.org
Supplement to “Change-point detection in panel data via double CUSUM statistic”. We
provide the detailed description of the Local Bootstrap and proof of some auxillary results. In …
provide the detailed description of the Local Bootstrap and proof of some auxillary results. In …
The group fused lasso for multiple change-point detection
K Bleakley, JP Vert - arXiv preprint arXiv:1106.4199, 2011 - arxiv.org
We present the group fused Lasso for detection of multiple change-points shared by a set of
co-occurring one-dimensional signals. Change-points are detected by approximating the …
co-occurring one-dimensional signals. Change-points are detected by approximating the …