Improved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis
A crucial step in functional genomics is identifying actively translated ORFs and linking them
to biological functions. The challenge lies in identifying short ORFs, as their identification is …
to biological functions. The challenge lies in identifying short ORFs, as their identification is …
[HTML][HTML] RNAirport: a deep neural network-based database characterizing representative gene models in plants
S Zhu, S Yuan, R Niu, Y Zhou, Z Wang, G Xu - Journal of Genetics and …, 2024 - Elsevier
Abstract A 5′-leader, known initially as the 5′-untranslated region, contains multiple
isoforms due to alternative splicing (aS) and alternative transcription start site (aTSS) …
isoforms due to alternative splicing (aS) and alternative transcription start site (aTSS) …
[PDF][PDF] Celebrating the ASPB centennial anniversary: A compendium of review articles in plant biology
This year, we celebrate 100 years of the American Society of Plant Biologists (ASPB;
formerly the American Society of Plant Physiologists). A major motivation for the society was …
formerly the American Society of Plant Physiologists). A major motivation for the society was …
Turnip mosaic virus NIb weakens the function of eukaryotic translation initiation factor 6 facilitating viral infection in Nicotiana benthamiana
Z Chen, F Wang, B Chen, G Wu, D Tian… - Molecular Plant …, 2024 - Wiley Online Library
Viruses rely completely on host translational machinery to produce the proteins encoded by
their genes. Controlling translation initiation is important for gaining translational advantage …
their genes. Controlling translation initiation is important for gaining translational advantage …
Celebrating the American Society of Plant Biologists centennial anniversary: A compendium of review articles in plant biology
This year we celebrate 100 years of the American Society of Plant Biologists (ASPB; formerly
the American Society of Plant Physiologists). A major motivation for the society was the …
the American Society of Plant Physiologists). A major motivation for the society was the …
Frontiers in plant RNA research in ICAR2023: from lab to innovative agriculture
The recent growth in global warming, soil contamination, and climate instability have widely
disturbed ecosystems, and will have a significant negative impact on the growth of plants …
disturbed ecosystems, and will have a significant negative impact on the growth of plants …
Widespread changes to the translational landscape in a maize microRNA biogenesis mutant
H Yang, B Thompson - The Plant Journal, 2024 - Wiley Online Library
MicroRNAs are short, non‐coding RNAs that repress gene expression in both plants and
animals and have diverse functions related to growth, development, and stress responses …
animals and have diverse functions related to growth, development, and stress responses …
Transcriptome and translatome comparison of tissues from Arabidopsis thaliana
IC Velez-Bermudez, WD Lin, SJ Chou, AP Chen… - bioRxiv, 2023 - biorxiv.org
Translation is one of the multiple complementary steps that orchestrates gene activity. In
contrast to the straightforwardness of transcriptional surveys, genome-wide profiles of the …
contrast to the straightforwardness of transcriptional surveys, genome-wide profiles of the …
Dispersed Transcription Start Sites Modulate uORF-Mediated Regulation in Arabidopsis
In eukaryotic mRNAs, upstream open reading frames (uORFs) in the 5 prime untranslated
regions (5 prime UTRs) often attenuate the translation of downstream main ORFs (mORFs) …
regions (5 prime UTRs) often attenuate the translation of downstream main ORFs (mORFs) …