Whole-genome sequencing and Mycobacterium tuberculosis: Challenges in sample preparation and sequencing data analysis

M Dohál, I Porvazník, K Pršo, EM Rasmussen, I Solovič… - Tuberculosis, 2020 - Elsevier
The numbers of patients with tuberculosis (TB) caused by resistant strains are still alarming.
Therefore, it is necessary to determine resistance more quickly and precisely, than it is with …

[HTML][HTML] The Detection of Mutations and Genotyping of Drug-Resistant Mycobacterium tuberculosis Strains Isolated from Patients in the Rural Eastern Cape Province

LM Faye, MC Hosu, S Oostvogels, A Dippenaar… - Infectious disease …, 2023 - mdpi.com
Drug-resistant tuberculosis (DR-TB) is still a major public health concern in South Africa.
Mutations in M. tuberculosis can cause varying levels of phenotypic resistance to anti-TB …

Characterization of Fluoroquinolone-Resistant and Multidrug-Resistant Mycobacterium tuberculosis Isolates Using Whole-Genome Sequencing in Tianjin, China

Z Wang, R Sun, C Mu, C Wang, H Zhao… - Infection and Drug …, 2022 - Taylor & Francis
Objective Tuberculosis (TB) caused by Mycobacterium tuberculosis remains a global
concern. This study aimed to determine the molecular characteristics of fluoroquinolone …

Identification of S315T mutation in katG gene using probe-free exclusive mismatch primers for a rapid diagnosis of isoniazid-resistant Mycobacterium tuberculosis by …

P Khumwan, S Pengpanich, J Kampeera… - Microchemical …, 2022 - Elsevier
We developed a LAMP-based technique that employs primers that carry base mismatches to
specifically detect the katG (S315T) SNP associated with isoniazid resistance in tuberculosis …

[HTML][HTML] Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes …

GA Bermúdez-Hernández, D Pérez-Martínez… - Microorganisms, 2024 - mdpi.com
Genetic variation in tuberculosis is influenced by the host environment, patients with
comorbidity, and tuberculosis–type 2 diabetes mellitus (TB-T2DM) and implies a higher risk …

[HTML][HTML] Isoniazid resistance-conferring mutations are associated with highly variable phenotypic resistance

SL Ngema, N Dookie, R Perumal, L Nandlal… - Journal of Clinical …, 2023 - Elsevier
Background High-dose isoniazid is recommended in the 9–12 months short-course regimen
for multidrug-resistant tuberculosis with inhA mutation. However, there is insufficient …

[HTML][HTML] Integrative utility of long read sequencing-based whole genome analysis and phenotypic assay on differentiating isoniazid-resistant signature of …

MC Yu, CS Hung, CK Huang, CH Wang… - Journal of Biomedical …, 2021 - Springer
Background With the advancement of next generation sequencing technologies (NGS),
whole-genome sequencing (WGS) has been deployed to a wide range of clinical scenarios …

[HTML][HTML] Whole genome sequencing analysis to evaluate the influence of T2DM on polymorphisms associated with drug resistance in M. tuberculosis

GA Bermudez-Hernández, DE Pérez-Martínez… - BMC genomics, 2022 - Springer
Background Type 2 diabetes mellitus (T2DM) has been associated with treatment failure,
and the development of drug resistance in tuberculosis (TB). Also, whole-genome …

Prevalence of katG and inhA mutations in genes associated with isoniazid resistance in Mycobacterium tuberculosis clinical isolates in Cameroon

VN Nono, EA Nantia, AM Mutshembele, SN Teagho… - medRxiv, 2024 - medrxiv.org
Purpose: Genetic mutations in the katG and inhA promoter regions are the main drivers of
isoniazid resistance. However, the geographical distribution of isoniazid resistance …

[PDF][PDF] Molecular Characterization of Mutations in Isoniazid-and Rifampicin-Resistant Mycobacterium tuberculosis Isolated in Thailand

J Rudeeaneksin, B Phetsuksiri, C Nakajima… - Japanese journal of …, 2023 - academia.edu
The control of drug-resistant tuberculosis (TB) is a major challenge. The frequency and
mutation characteristics indicate the efficiency of molecular tests for the rapid detection of TB …