Sorption of petroleum hydrocarbons before transmembrane transport and the structure, mechanisms and functional regulation of microbial membrane transport …

J Wu, R Zhao, L Zhao, Q Xu, J Lv, F Ma - Journal of Hazardous Materials, 2023 - Elsevier
With the rapid development of the global industrialization process, as an important energy
and strategic resource, petroleum is widely used in various fields. Meanwhile, the leakage of …

Liquid chromatography–high-resolution mass spectrometry-based cell metabolomics: Experimental design, recommendations, and applications

BM Hounoum, H Blasco, P Emond, S Mavel - TrAC Trends in Analytical …, 2016 - Elsevier
Cell metabolomics is a comprehensive analytical approach to study small biological
molecules involved in many fundamental intracellular functions, linking mechanistic …

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

D Vallenet, A Calteau, S Cruveiller… - Nucleic acids …, 2017 - academic.oup.com
The annotation of genomes from NGS platforms needs to be automated and fully integrated.
However, maintaining consistency and accuracy in genome annotation is a challenging …

Development of a genetic toolset for the highly engineerable and metabolically versatile Acinetobacter baylyi ADP1

BW Biggs, SR Bedore, E Arvay, S Huang… - Nucleic Acids …, 2020 - academic.oup.com
One primary objective of synthetic biology is to improve the sustainability of chemical
manufacturing. Naturally occurring biological systems can utilize a variety of carbon sources …

Acinetobacter baylyi ADP1—naturally competent for synthetic biology

S Santala, V Santala - Essays in Biochemistry, 2021 - portlandpress.com
Acinetobacter baylyi ADP1 is a non-pathogenic soil bacterium known for its metabolic
diversity and high natural transformation and recombination efficiency. For these features, A …

Pyruvate kinase, a metabolic sensor powering glycolysis, drives the metabolic control of DNA replication

S Horemans, M Pitoulias, A Holland, E Pateau… - BMC biology, 2022 - Springer
Background In all living organisms, DNA replication is exquisitely regulated in a wide range
of growth conditions to achieve timely and accurate genome duplication prior to cell division …

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

K Bastard, A Perret, A Mariage, T Bessonnet… - Nature Chemical …, 2017 - nature.com
Experimental validation of enzyme function is crucial for genome interpretation, but it
remains challenging because it cannot be scaled up to accommodate the constant …

Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining

GA Suárez, KR Dugan, BA Renda… - Nucleic Acids …, 2020 - academic.oup.com
One goal of synthetic biology is to improve the efficiency and predictability of living cells by
removing extraneous genes from their genomes. We demonstrate improved methods for …

Annotation of the Staphylococcus aureus Metabolome Using Liquid Chromatography Coupled to High-Resolution Mass Spectrometry and Application to the Study of …

S Aros-Calt, BH Muller, S Boudah… - Journal of Proteome …, 2015 - ACS Publications
Staphylococcus aureus can cause a variety of severe disease patterns and can readily
acquire antibiotic resistance; however, the mechanisms by which this commensal becomes …

Anaerobic pathways for the catabolism of aromatic compounds

Aromatic compounds are the second most abundant class of organic compounds in nature
after carbohydrates and they derive mostly from the polymer lignin. Soluble plant-derived …