Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
CRISPR base editing screens enable analysis of disease-associated variants at scale;
however, variable efficiency and precision confounds the assessment of variant-induced …
however, variable efficiency and precision confounds the assessment of variant-induced …
Preclinical Anticipation of On-and Off-Target Resistance Mechanisms to Anti-Cancer Drugs: A Systematic Review
PJ Dziubańska-Kusibab, E Nevedomskaya… - International Journal of …, 2024 - mdpi.com
The advent of targeted therapies has led to tremendous improvements in treatment options
and their outcomes in the field of oncology. Yet, many cancers outsmart precision drugs by …
and their outcomes in the field of oncology. Yet, many cancers outsmart precision drugs by …
A mutational atlas for Parkin proteostasis
L Clausen, V Voutsinos, M Cagiada… - Nature …, 2024 - nature.com
Proteostasis can be disturbed by mutations affecting folding and stability of the encoded
protein. An example is the ubiquitin ligase Parkin, where gene variants result in autosomal …
protein. An example is the ubiquitin ligase Parkin, where gene variants result in autosomal …
Analyzing the functional effects of DNA variants with gene editing
S Cooper, S Obolenski, AJ Waters, AR Bassett… - Cell Reports …, 2024 - cell.com
Continual advancements in genomics have led to an ever-widening disparity between the
rate of discovery of genetic variants and our current understanding of their functions and …
rate of discovery of genetic variants and our current understanding of their functions and …
Base editor scanning reveals activating mutations of DNMT3A
DNA methyltransferase 3A (DNMT3A) is a de novo cytosine methyltransferase responsible
for establishing proper DNA methylation during mammalian development. Loss-of-function …
for establishing proper DNA methylation during mammalian development. Loss-of-function …
Accelerated drug-resistant variant discovery with an enhanced, scalable mutagenic base editor platform
Personalized cancer therapeutics bring directed treatment options to patients based on their
tumor's genetic signature. Unfortunately, tumor genomes are remarkably adaptable, and …
tumor's genetic signature. Unfortunately, tumor genomes are remarkably adaptable, and …
Forward Genetic Screens Identify Mechanisms of Resistance to Small-Molecule Lactate Dehydrogenase Inhibitors
AR Frank, F Vandiver, DG McFadden - ACS chemical biology, 2024 - ACS Publications
Altered metabolism is a hallmark of cancer; however, it has been difficult to specifically target
metabolism in cancer for therapeutic benefit. Cancers with genetically defined defects in …
metabolism in cancer for therapeutic benefit. Cancers with genetically defined defects in …
Helicase-assisted continuous editing for programmable mutagenesis of endogenous genomes
A major challenge in human genomics is to decipher the context specific relationship of
sequence to function. However, existing tools for locus specific hypermutation and evolution …
sequence to function. However, existing tools for locus specific hypermutation and evolution …
Asymmetric Engagement of Dimeric CRL3KBTBD4 by the Molecular Glue UM171 Licenses Degradation of HDAC1/2 Complexes
UM171 is a potent small molecule agonist of ex vivo human hematopoietic stem cell (HSC)
self-renewal, a process that is tightly controlled by epigenetic regulation. By co-opting …
self-renewal, a process that is tightly controlled by epigenetic regulation. By co-opting …
Engineering computational single-cell and CRISPR-based functional genomics tools to study dynamic gene regulation in hematopoietic development and disease
ME Vinyard - 2024 - dash.harvard.edu
Mammalian hematopoiesis, the process by which blood cells develop from a common
progenitor cell, is evolutionarily conserved and unfolds continuously over the lifetime of an …
progenitor cell, is evolutionarily conserved and unfolds continuously over the lifetime of an …