CD4+ T cells in cancer

DE Speiser, O Chijioke, K Schaeuble, C Münz - Nature cancer, 2023 - nature.com
Cancer immunology and immunotherapy are driving forces of research and development in
oncology, mostly focusing on CD8+ T cells and the tumor microenvironment. Recent …

Identification of neoantigens for individualized therapeutic cancer vaccines

F Lang, B Schrörs, M Löwer, Ö Türeci… - Nature reviews Drug …, 2022 - nature.com
Somatic mutations in cancer cells can generate tumour-specific neoepitopes, which are
recognized by autologous T cells in the host. As neoepitopes are not subject to central …

[HTML][HTML] Advances in the development of personalized neoantigen-based therapeutic cancer vaccines

E Blass, PA Ott - Nature reviews Clinical oncology, 2021 - nature.com
Within the past decade, the field of immunotherapy has revolutionized the treatment of many
cancers with the development and regulatory approval of various immune-checkpoint …

[HTML][HTML] Cancer vaccines: Building a bridge over troubled waters

MLC Sellars, CJ Wu, EF Fritsch - Cell, 2022 - cell.com
Cancer vaccines aim to direct the immune system to eradicate cancer cells. Here we review
the essential immunologic concepts underpinning natural immunity and highlight the …

[HTML][HTML] A phase Ib trial of personalized neoantigen therapy plus anti-PD-1 in patients with advanced melanoma, non-small cell lung cancer, or bladder cancer

PA Ott, S Hu-Lieskovan, B Chmielowski, R Govindan… - Cell, 2020 - cell.com
Neoantigens arise from mutations in cancer cells and are important targets of T cell-
mediated anti-tumor immunity. Here, we report the first open-label, phase Ib clinical trial of a …

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand …

B Reynisson, B Alvarez, S Paul, B Peters… - Nucleic acids …, 2020 - academic.oup.com
Major histocompatibility complex (MHC) molecules are expressed on the cell surface, where
they present peptides to T cells, which gives them a key role in the development of T-cell …

[HTML][HTML] Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction

DK Wells, MM van Buuren, KK Dang… - Cell, 2020 - cell.com
Many approaches to identify therapeutically relevant neoantigens couple tumor sequencing
with bioinformatic algorithms and inferred rules of tumor epitope immunogenicity. However …

[HTML][HTML] MHCflurry 2.0: improved pan-allele prediction of MHC class I-presented peptides by incorporating antigen processing

TJ O'Donnell, A Rubinsteyn, U Laserson - Cell systems, 2020 - cell.com
Computational prediction of the peptides presented on major histocompatibility complex
(MHC) class I proteins is an important tool for studying T cell immunity. The data available to …

[HTML][HTML] A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Y Chu, Y Zhang, Q Wang, L Zhang, X Wang… - Nature Machine …, 2022 - nature.com
Human leukocyte antigen (HLA) can recognize and bind foreign peptides to present them to
specialized immune cells, then initiate an immune response. Computational prediction of the …

[HTML][HTML] Promises and challenges of adoptive T-cell therapies for solid tumours

M Morotti, A Albukhari, A Alsaadi, M Artibani… - British journal of …, 2021 - nature.com
Cancer is a leading cause of death worldwide and, despite new targeted therapies and
immunotherapies, many patients with advanced-stage-or high-risk cancers still die, owing to …