Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

P Agarwal, SK Parida, A Mahto, S Das… - Biotechnology …, 2014 - Wiley Online Library
The transcript pool of a plant part, under any given condition, is a collection of mRNAs that
will pave the way for a biochemical reaction of the plant to stimuli. Over the past decades …

GC–MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage-and cultivar …

A Cuadros-Inostroza, S Ruíz-Lara, E González… - Metabolomics, 2016 - Springer
Abstract Information about the total chemical composition of primary metabolites during
grape berry development is scarce, as are comparative studies trying to understand to what …

Terpene evolution during the development of Vitis vinifera L. cv. Shiraz grapes

P Zhang, S Fuentes, T Siebert, M Krstic, M Herderich… - Food Chemistry, 2016 - Elsevier
The flavour of wine is derived, in part, from the flavour compounds present in the grape,
which change as the grapes accumulate sugar and ripen. Grape berry terpene …

Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits

S Savoi, A Santiago, L Orduña, JT Matus - Frontiers in Plant Science, 2022 - frontiersin.org
Transcriptomics and metabolomics are methodologies being increasingly chosen to perform
molecular studies in grapevine (Vitis vinifera L.), focusing either on plant and fruit …

Omics approaches for understanding grapevine berry development: regulatory networks associated with endogenous processes and environmental responses

A Serrano, C Espinoza, G Armijo… - Frontiers in plant …, 2017 - frontiersin.org
Grapevine fruit development is a dynamic process that can be divided into three stages:
formation (I), lag (II), and ripening (III), in which physiological and biochemical changes …

Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes …

DCJ Wong, R Lopez Gutierrez, N Dimopoulos… - BMC genomics, 2016 - Springer
Background In wine grape production, management practices have been adopted to
optimize grape and wine quality attributes by producing, or screening for, berries of smaller …

A recessive mutation in muscadine grapes causes berry color-loss without influencing anthocyanin pathway

A Ismail, P Gajjar, M Park, A Mahboob… - Communications …, 2022 - nature.com
Anthocyanins, a major class of flavonoids, are important pigments of grape berries. Despite
the recent discovery of the genetic cause underlying the loss of color, the metabolomic and …

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

V Thole, JE Bassard, R Ramírez-González, M Trick… - BMC genomics, 2019 - Springer
Background Flavonoids are produced in all flowering plants in a wide range of tissues
including in berry fruits. These compounds are of considerable interest for their biological …

Integrative analysis of metabolome and transcriptome reveals anthocyanins biosynthesis regulation in grass species Pennisetum purpureum

S Zhou, J Chen, Y Lai, G Yin, P Chen… - Industrial Crops and …, 2019 - Elsevier
Genes or metabolites involved in the same biological process will have same or similar
change rules, so association analysis of transcriptome and metabolome is an effective way …

Precision breeding of grapevine (Vitis vinifera L.) for improved traits

DJ Gray, ZT Li, SA Dhekney - Plant science, 2014 - Elsevier
This review provides an overview of recent technological advancements that enable
precision breeding to genetically improve elite cultivars of grapevine (Vitis vinifera L.) …