A critical review of bottom-up proteomics: the good, the bad, and the future of this field

EJ Dupree, M Jayathirtha, H Yorkey, M Mihasan… - Proteomes, 2020 - mdpi.com
Proteomics is the field of study that includes the analysis of proteins, from either a basic
science prospective or a clinical one. Proteins can be investigated for their abundance …

Mass spectrometry for proteomics

X Han, A Aslanian, JR Yates III - Current opinion in chemical biology, 2008 - Elsevier
Mass spectrometry has been widely used to analyze biological samples and has evolved
into an indispensable tool for proteomics research. Our desire to understand the proteome …

[HTML][HTML] Proteomics: challenges, techniques and possibilities to overcome biological sample complexity

K Chandramouli, PY Qian - Human genomics and proteomics: HGP, 2009 - ncbi.nlm.nih.gov
Proteomics is the large-scale study of the structure and function of proteins in complex
biological sample. Such an approach has the potential value to understand the complex …

Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel-or LC− MALDI TOF/TOF

WW Wu, G Wang, SJ Baek… - Journal of proteome …, 2006 - ACS Publications
A comparative study on the three quantitative methods frequently used in proteomics, 2D
DIGE (difference gel electrophoresis), cICAT (cleavable isotope-coded affinity tags) and …

Fast, comprehensive two-dimensional liquid chromatography

DR Stoll, X Li, X Wang, PW Carr, SEG Porter… - … of Chromatography A, 2007 - Elsevier
The absolute need to improve the separating power of liquid chromatography, especially for
multi-constituent biological samples, is becoming increasingly evident. In response, over the …

Bioanalytical LC–MS/MS of protein-based biopharmaceuticals

I van den Broek, WMA Niessen… - … of Chromatography B, 2013 - Elsevier
Biotechnology increasingly delivers highly promising protein-based biopharmaceutical
candidates to the drug development funnel. For successful biopharmaceutical drug …

Proteomics of integral membrane proteins theory and application

AE Speers, CC Wu - Chemical reviews, 2007 - ACS Publications
Integral membrane proteins (IMPs) lie at the critical junctions between intracellular
compartments and cells and their environment. As such, IMPs are in a unique position to …

Ultrafast and reproducible proteomics from small amounts of heart tissue enabled by Azo and timsTOF pro

TJ Aballo, DS Roberts, JA Melby, KM Buck… - Journal of Proteome …, 2021 - ACS Publications
Global bottom-up mass spectrometry (MS)-based proteomics is widely used for protein
identification and quantification to achieve a comprehensive understanding of the …

Stationary phases for hydrophilic interaction chromatography, their characterization and implementation into multidimensional chromatography concepts

P Jandera - Journal of separation science, 2008 - Wiley Online Library
Hydrophilic interaction chromatography (HILIC) is becoming increasingly popular for
separation of polar samples on polar columns in aqueous‐organic mobile phases rich in …

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis

S Di Palma, ML Hennrich, AJR Heck, S Mohammed - Journal of proteomics, 2012 - Elsevier
Shotgun proteomics dominates the field of proteomics. The foundations of the strategy
consist of multiple rounds of peptide separation where chromatography provides the …