Machine learning for big data analytics in plants

C Ma, HH Zhang, X Wang - Trends in plant science, 2014 - cell.com
Rapid advances in high-throughput genomic technology have enabled biology to enter the
era of 'Big Data'(large datasets). The plant science community not only needs to build its …

[HTML][HTML] Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health

HC Jubb, AP Pandurangan, MA Turner… - Progress in biophysics …, 2017 - Elsevier
Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation

J Jankauskaitė, B Jiménez-García, J Dapkūnas… - …, 2019 - academic.oup.com
Motivation Understanding the relationship between the sequence, structure, binding energy,
binding kinetics and binding thermodynamics of protein–protein interactions is crucial to …

[HTML][HTML] MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions

N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez… - Iscience, 2020 - cell.com
Missense mutations may affect proteostasis by destabilizing or over-stabilizing protein
complexes and changing the pathway flux. Predicting the effects of stabilizing mutations on …

[HTML][HTML] Mas-related G protein-coupled receptor-X2 (MRGPRX2) in drug hypersensitivity reactions

G Porebski, K Kwiecien, M Pawica… - Frontiers in …, 2018 - frontiersin.org
The human ortholog MRGPRX2 and the mice ortholog, Mrgprb2 are activated by basic
secretagogues and neurokinins. A number of commonly used small-molecule drugs (eg …

[HTML][HTML] Gene expression networks regulated by human personality

C Del Val, E Díaz de la Guardia-Bolívar, I Zwir… - Molecular …, 2024 - nature.com
Genome-wide association studies of human personality have been carried out, but
transcription of the whole genome has not been studied in relation to personality in humans …

Data integration and predictive modeling methods for multi-omics datasets

M Kim, I Tagkopoulos - Molecular omics, 2018 - pubs.rsc.org
Translating data to knowledge and actionable insights is the Holy Grail for many scientific
fields, including biology. The unprecedented massive and heterogeneous data have created …

In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review

M Yazar, P Özbek - OMICS: A Journal of Integrative Biology, 2021 - liebertpub.com
Single-nucleotide polymorphisms (SNPs) are single-base variants that contribute to human
biological variation and pathogenesis of many human diseases. Among all SNP types …

[HTML][HTML] Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome

KA Pagel, D Antaki, AJ Lian, M Mort… - PLoS computational …, 2019 - journals.plos.org
Differentiation between phenotypically neutral and disease-causing genetic variation
remains an open and relevant problem. Among different types of variation, non-frameshifting …

[HTML][HTML] Mutation-structure-function relationship based integrated strategy reveals the potential impact of deleterious missense mutations in autophagy related proteins …

FM Awan, A Obaid, A Ikram, HA Janjua - International journal of molecular …, 2017 - mdpi.com
Autophagy, an evolutionary conserved multifaceted lysosome-mediated bulk degradation
system, plays a vital role in liver pathologies including hepatocellular carcinoma (HCC). Post …