Clinical and translational values of spatial transcriptomics
L Zhang, D Chen, D Song, X Liu, Y Zhang… - … and Targeted Therapy, 2022 - nature.com
The combination of spatial transcriptomics (ST) and single cell RNA sequencing (scRNA-
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …
[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges
M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …
technology, from the invention of the microscope 350 years ago to the recent emergence of …
Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer
Y Ozato, Y Kojima, Y Kobayashi, Y Hisamatsu… - Cell reports, 2023 - cell.com
The cellular interactions in the tumor microenvironment of colorectal cancer (CRC) are
poorly understood, hindering patient treatment. In the current study, we investigate whether …
poorly understood, hindering patient treatment. In the current study, we investigate whether …
Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing
H Li, S Bräunig, P Dhapolar, G Karlsson, S Lang… - Elife, 2023 - elifesciences.org
Hematopoiesis is regulated by the bone marrow (BM) stroma. However, cellular identities
and functions of the different BM stromal elements in humans remain poorly defined. Based …
and functions of the different BM stromal elements in humans remain poorly defined. Based …
Fetal liver development and implications for liver disease pathogenesis
J Lotto, TL Stephan, PA Hoodless - Nature Reviews Gastroenterology & …, 2023 - nature.com
The metabolic, digestive and homeostatic roles of the liver are dependent on proper
crosstalk and organization of hepatic cell lineages. These hepatic cell lineages are derived …
crosstalk and organization of hepatic cell lineages. These hepatic cell lineages are derived …
Harnessing computational spatial omics to explore the spatial biology intricacies
Z Yuan, J Yao - Seminars in Cancer Biology, 2023 - Elsevier
Spatially resolved transcriptomics (SRT) has unlocked new dimensions in our
understanding of intricate tissue architectures. However, this rapidly expanding field …
understanding of intricate tissue architectures. However, this rapidly expanding field …
A specialized bone marrow microenvironment for fetal haematopoiesis
In adult mammalian bone marrow (BM), vascular endothelial cells and perivascular reticular
cells control the function of haematopoietic stem and progenitor cells (HSPCs). During fetal …
cells control the function of haematopoietic stem and progenitor cells (HSPCs). During fetal …
Spatial transcriptomics in development and disease
The proper functioning of diverse biological systems depends on the spatial organization of
their cells, a critical factor for biological processes like shaping intricate tissue functions and …
their cells, a critical factor for biological processes like shaping intricate tissue functions and …
Single-cell characterization of self-renewing primary trophoblast organoids as modeling of EVT differentiation and interactions with decidual natural killer cells
BM Zhuang, DD Cao, TX Li, XF Liu, MM Lyu, SD Wang… - BMC genomics, 2023 - Springer
Background Extravillous trophoblast cell (EVT) differentiation and its communication with
maternal decidua especially the leading immune cell type natural killer (NK) cell are critical …
maternal decidua especially the leading immune cell type natural killer (NK) cell are critical …
Deregulated protein homeostasis constrains fetal hematopoietic stem cell pool expansion in Fanconi anemia
N Kovuru, M Mochizuki-Kashio, T Menna… - Nature …, 2024 - nature.com
Demand-adjusted and cell type specific rates of protein synthesis represent an important
safeguard for fate and function of long-term hematopoietic stem cells. Here, we identify …
safeguard for fate and function of long-term hematopoietic stem cells. Here, we identify …