Clinical and translational values of spatial transcriptomics

L Zhang, D Chen, D Song, X Liu, Y Zhang… - … and Targeted Therapy, 2022 - nature.com
The combination of spatial transcriptomics (ST) and single cell RNA sequencing (scRNA-
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …

[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …

Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer

Y Ozato, Y Kojima, Y Kobayashi, Y Hisamatsu… - Cell reports, 2023 - cell.com
The cellular interactions in the tumor microenvironment of colorectal cancer (CRC) are
poorly understood, hindering patient treatment. In the current study, we investigate whether …

Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing

H Li, S Bräunig, P Dhapolar, G Karlsson, S Lang… - Elife, 2023 - elifesciences.org
Hematopoiesis is regulated by the bone marrow (BM) stroma. However, cellular identities
and functions of the different BM stromal elements in humans remain poorly defined. Based …

Fetal liver development and implications for liver disease pathogenesis

J Lotto, TL Stephan, PA Hoodless - Nature Reviews Gastroenterology & …, 2023 - nature.com
The metabolic, digestive and homeostatic roles of the liver are dependent on proper
crosstalk and organization of hepatic cell lineages. These hepatic cell lineages are derived …

Harnessing computational spatial omics to explore the spatial biology intricacies

Z Yuan, J Yao - Seminars in Cancer Biology, 2023 - Elsevier
Spatially resolved transcriptomics (SRT) has unlocked new dimensions in our
understanding of intricate tissue architectures. However, this rapidly expanding field …

A specialized bone marrow microenvironment for fetal haematopoiesis

Y Liu, Q Chen, HW Jeong, BI Koh, EC Watson… - Nature …, 2022 - nature.com
In adult mammalian bone marrow (BM), vascular endothelial cells and perivascular reticular
cells control the function of haematopoietic stem and progenitor cells (HSPCs). During fetal …

Spatial transcriptomics in development and disease

R Zhou, G Yang, Y Zhang, Y Wang - Molecular Biomedicine, 2023 - Springer
The proper functioning of diverse biological systems depends on the spatial organization of
their cells, a critical factor for biological processes like shaping intricate tissue functions and …

Single-cell characterization of self-renewing primary trophoblast organoids as modeling of EVT differentiation and interactions with decidual natural killer cells

BM Zhuang, DD Cao, TX Li, XF Liu, MM Lyu, SD Wang… - BMC genomics, 2023 - Springer
Background Extravillous trophoblast cell (EVT) differentiation and its communication with
maternal decidua especially the leading immune cell type natural killer (NK) cell are critical …

Deregulated protein homeostasis constrains fetal hematopoietic stem cell pool expansion in Fanconi anemia

N Kovuru, M Mochizuki-Kashio, T Menna… - Nature …, 2024 - nature.com
Demand-adjusted and cell type specific rates of protein synthesis represent an important
safeguard for fate and function of long-term hematopoietic stem cells. Here, we identify …