This review examines protein complexes in the Brookhaven Protein Databank to gain a
better understanding of the principles governing the interactions involved in protein-protein …

With the rapidly increasing amount of molecular biological data available, the computer-
based analysis of molecular interactions becomes more and more feasible. Methods for …

The docking field has come of age. The time is ripe to present the principles of docking,
reviewing the current state of the field. Two reasons are largely responsible for the maturity …

A protein docking study was performed for two classes of biomolecular complexes: six
enzyme/inhibitor and four antibody/antigen. Biomolecular complexes for which crystal …

Computer-based methods for predicting the structure of ligand–protein complexes or
docking algorithms have application in both drug design and the elucidation of biochemical …

We report the construction and the use of a phage display human antibody library (> 3× 10 8
clones) based on principles of protein design. A large repertoire of functional antibodies with …

Many proteins have evolved to form specific molecular complexes and the specificity of this
interaction is essential for their function. The network of the necessary inter-residue contacts …

Fueled by advances in molecular structure determination, tools for structure‐based drug
design are proliferating rapidly. Lead discovery through searching of ligand databases with …

A protein–protein docking approach has been developed based on a reduced protein
representation with up to three pseudo atoms per amino acid residue. Docking is performed …

A method for defining and analysing a series of residue patches on the surface of protein
structures is used to predict the location of protein-protein interaction sites. Each residue …