Integrated analysis of transcriptomic and proteomic data

S Haider, R Pal - Current genomics, 2013 - ingentaconnect.com
Until recently, understanding the regulatory behavior of cells has been pursued through
independent analysis of the transcriptome or the proteome. Based on the central dogma, it …

Integrating transcriptome and proteome profiling: Strategies and applications

D Kumar, G Bansal, A Narang, T Basak, T Abbas… - …, 2016 - Wiley Online Library
Discovering the gene expression signature associated with a cellular state is one of the
basic quests in majority of biological studies. For most of the clinical and cellular …

[HTML][HTML] Multi-omics and metabolic modelling pipelines: challenges and tools for systems microbiology

M Fondi, P Liò - Microbiological research, 2015 - Elsevier
Integrated-omics approaches are quickly spreading across microbiology research labs,
leading to (i) the possibility of detecting previously hidden features of microbial cells like …

Meat science: From proteomics to integrated omics towards system biology

A D'Alessandro, L Zolla - Journal of proteomics, 2013 - Elsevier
Since the main ultimate goal of farm animal raising is the production of proteins for human
consumption, research tools to investigate proteins play a major role in farm animal and …

The application of multi-omics and systems biology to identify therapeutic targets in chronic kidney disease

K Cisek, M Krochmal, J Klein… - Nephrology Dialysis …, 2016 - academic.oup.com
The quest for the ideal therapeutic target in chronic kidney disease (CKD) has been riddled
with many obstacles stemming from the molecular complexity of the disease and its co …

Heat Priming Induces Trans-generational Tolerance to High Temperature Stress in Wheat

X Wang, C Xin, J Cai, Q Zhou, T Dai, W Cao… - Frontiers in Plant …, 2016 - frontiersin.org
Wheat plants are very sensitive to high temperature stress during grain filling. Effects of heat
priming applied to the first generation on tolerance of the successive generation to post …

Network-based technologies for early drug discovery

C Fotis, A Antoranz, D Hatziavramidis… - Drug discovery today, 2018 - Elsevier
Highlights•The reductionist drug discovery approach entails high attrition rates.•Topology-
based pathway analysis can unravel the disease mechanism (s).•Candidate targets can be …

Ragweed (Ambrosia artemisiifolia) pollen allergenicity: SuperSAGE transcriptomic analysis upon elevated CO2 and drought stress

A El Kelish, F Zhao, W Heller, J Durner, JB Winkler… - BMC Plant …, 2014 - Springer
Background Pollen of common ragweed (Ambrosia artemisiifolia) is a main cause of allergic
diseases in Northern America. The weed has recently become spreading as a neophyte in …

[HTML][HTML] Integrated transcriptome-proteome analyses of human stem cells reveal source-dependent differences in their regenerative signature

A Ganguly, G Swaminathan, F Garcia-Marques… - Stem Cell Reports, 2023 - cell.com
Mesenchymal stem cells (MSCs) are gaining increasing prominence as an effective
regenerative cellular therapy. However, ensuring consistent and reliable effects across …

[HTML][HTML] Systems biology of kidney diseases

JC He, PY Chuang, A Ma'Ayan, R Iyengar - Kidney international, 2012 - Elsevier
Kidney diseases manifest in progressive loss of renal function, which ultimately leads to
complete kidney failure. The mechanisms underlying the origins and progression of kidney …