Chromatin structure and dynamics: one nucleosome at a time

DM Presman, B Benítez, AL Lafuente… - Histochemistry and Cell …, 2024 - Springer
Eukaryotic genomes store information on many levels, including their linear DNA sequence,
the posttranslational modifications of its constituents (epigenetic modifications), and its three …

Toward a comprehensive view of gene architecture during transcription

MA Woodworth, M Lakadamyali - Current Opinion in Genetics & …, 2024 - Elsevier
Highlights•Gene activation involves a complex interplay of many regulatory mechanisms•
Microscopy is indespensable for studying gene regulation•Multi-modal imaging methods are …

[HTML][HTML] Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment

TA Daugird, Y Shi, KL Holland, H Rostamian… - Nature …, 2024 - nature.com
In the nucleus, biological processes are driven by proteins that diffuse through and bind to a
meshwork of nucleic acid polymers. To better understand this interplay, we present an …

[HTML][HTML] Identification and partial characterization of new cell density-dependent nucleocytoplasmic shuttling proteins and open chromatin

K Li, Y Li, F Nakamura - Scientific Reports, 2023 - nature.com
The contact inhibition of proliferation (CIP) denotes the cell density-dependent inhibition of
growth, and the loss of CIP represents a hallmark of cancer. However, the mechanism by …

nucMACC: An MNase-seq pipeline to identify structurally altered nucleosomes in the genome

S Wernig-Zorc, F Kugler, L Schmutterer, P Räß… - Science …, 2024 - science.org
Micrococcal nuclease sequencing is the state-of-the-art method for determining chromatin
structure and nucleosome positioning. Data analysis is complex due to the AT-dependent …

Chromatin organization and behavior in HRAS-transformed mouse fibroblasts

A Otsuka, K Minami, K Higashi, A Kawaguchi… - Chromosoma, 2024 - Springer
In higher eukaryotic cells, a string of nucleosomes, where long genomic DNA is wrapped
around core histones, are rather irregularly folded into a number of condensed chromatin …

Behaviors of nucleosomes with mutant histone H4s in euchromatic domains of living human cells

A Semeigazin, S Iida, K Minami, S Tamura… - Histochemistry and Cell …, 2024 - Springer
Abstract Since Robert Feulgen first stained DNA in the cell, visualizing genome chromatin
has been a central issue in cell biology to uncover how chromatin is organized and behaves …

[HTML][HTML] Orientation-Independent-DIC imaging reveals that a transient rise in depletion force contributes to mitotic chromosome condensation

S Iida, S Ide, S Tamura, T Tani, T Goto, M Shribak… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Genomic information must be faithfully transmitted into two daughter cells during mitosis. To
ensure the transmission process, interphase chromatin is further condensed into mitotic …

Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy

DP Melters, KC Neuman, RS Bentahar, T Rakshit… - Elife, 2023 - elifesciences.org
Chromatin accessibility is modulated in a variety of ways to create open and closed
chromatin states, both of which are critical for eukaryotic gene regulation. At the single …

[HTML][HTML] Chromatin compaction by Polycomb group proteins revisited

M Uckelmann, C Davidovich - Current Opinion in Structural Biology, 2024 - Elsevier
The chromatin compaction activity of Polycomb group proteins has traditionally been
considered essential for transcriptional repression. However, there is very little information …