Chromatin structure and dynamics: one nucleosome at a time
DM Presman, B Benítez, AL Lafuente… - Histochemistry and Cell …, 2024 - Springer
Eukaryotic genomes store information on many levels, including their linear DNA sequence,
the posttranslational modifications of its constituents (epigenetic modifications), and its three …
the posttranslational modifications of its constituents (epigenetic modifications), and its three …
Toward a comprehensive view of gene architecture during transcription
MA Woodworth, M Lakadamyali - Current Opinion in Genetics & …, 2024 - Elsevier
Highlights•Gene activation involves a complex interplay of many regulatory mechanisms•
Microscopy is indespensable for studying gene regulation•Multi-modal imaging methods are …
Microscopy is indespensable for studying gene regulation•Multi-modal imaging methods are …
[HTML][HTML] Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment
In the nucleus, biological processes are driven by proteins that diffuse through and bind to a
meshwork of nucleic acid polymers. To better understand this interplay, we present an …
meshwork of nucleic acid polymers. To better understand this interplay, we present an …
[HTML][HTML] Identification and partial characterization of new cell density-dependent nucleocytoplasmic shuttling proteins and open chromatin
K Li, Y Li, F Nakamura - Scientific Reports, 2023 - nature.com
The contact inhibition of proliferation (CIP) denotes the cell density-dependent inhibition of
growth, and the loss of CIP represents a hallmark of cancer. However, the mechanism by …
growth, and the loss of CIP represents a hallmark of cancer. However, the mechanism by …
nucMACC: An MNase-seq pipeline to identify structurally altered nucleosomes in the genome
S Wernig-Zorc, F Kugler, L Schmutterer, P Räß… - Science …, 2024 - science.org
Micrococcal nuclease sequencing is the state-of-the-art method for determining chromatin
structure and nucleosome positioning. Data analysis is complex due to the AT-dependent …
structure and nucleosome positioning. Data analysis is complex due to the AT-dependent …
Chromatin organization and behavior in HRAS-transformed mouse fibroblasts
A Otsuka, K Minami, K Higashi, A Kawaguchi… - Chromosoma, 2024 - Springer
In higher eukaryotic cells, a string of nucleosomes, where long genomic DNA is wrapped
around core histones, are rather irregularly folded into a number of condensed chromatin …
around core histones, are rather irregularly folded into a number of condensed chromatin …
Behaviors of nucleosomes with mutant histone H4s in euchromatic domains of living human cells
A Semeigazin, S Iida, K Minami, S Tamura… - Histochemistry and Cell …, 2024 - Springer
Abstract Since Robert Feulgen first stained DNA in the cell, visualizing genome chromatin
has been a central issue in cell biology to uncover how chromatin is organized and behaves …
has been a central issue in cell biology to uncover how chromatin is organized and behaves …
[HTML][HTML] Orientation-Independent-DIC imaging reveals that a transient rise in depletion force contributes to mitotic chromosome condensation
Genomic information must be faithfully transmitted into two daughter cells during mitosis. To
ensure the transmission process, interphase chromatin is further condensed into mitotic …
ensure the transmission process, interphase chromatin is further condensed into mitotic …
Single molecule analysis of CENP-A chromatin by high-speed atomic force microscopy
Chromatin accessibility is modulated in a variety of ways to create open and closed
chromatin states, both of which are critical for eukaryotic gene regulation. At the single …
chromatin states, both of which are critical for eukaryotic gene regulation. At the single …
[HTML][HTML] Chromatin compaction by Polycomb group proteins revisited
M Uckelmann, C Davidovich - Current Opinion in Structural Biology, 2024 - Elsevier
The chromatin compaction activity of Polycomb group proteins has traditionally been
considered essential for transcriptional repression. However, there is very little information …
considered essential for transcriptional repression. However, there is very little information …