Heat flux for many-body interactions: corrections to LAMMPS

P Boone, H Babaei, CE Wilmer - Journal of chemical theory and …, 2019 - ACS Publications
The virial stress tensor-based instantaneous heat flux, which is used by LAMMPS, is only
valid for the small subset of simulations that contain only pairwise interactions. For systems …

Structural basis for recognition of N-formyl peptides as pathogen-associated molecular patterns

G Chen, X Wang, Q Liao, Y Ge, H Jiao, Q Chen… - Nature …, 2022 - nature.com
The formyl peptide receptor 1 (FPR1) is primarily responsible for detection of short peptides
bearing N-formylated methionine (fMet) that are characteristic of protein synthesis in bacteria …

AARON: an automated reaction optimizer for new catalysts

Y Guan, VM Ingman, BJ Rooks… - Journal of chemical …, 2018 - ACS Publications
We describe an open-source computational toolkit (AARON: An Automated Reaction
Optimizer for New catalysts) that automates the quantum mechanical geometry optimization …

Five-coordinate transition metal complexes and the value of τ 5: observations and caveats

AG Blackman, EB Schenk, RE Jelley, EH Krenske… - Dalton …, 2020 - pubs.rsc.org
The τ5 parameter, first proposed by Addison and coworkers, is the principal measure of the
geometry of five-coordinate transition metal complexes, with τ5= 0 said to describe a perfect …

Ultrasound versus light: Exploring photophysicochemical and sonochemical properties of phthalocyanine-based therapeutics, theoretical study, and in vitro …

E Guzel, GY Atmaca, AE Kuznetsov… - ACS Applied Bio …, 2022 - ACS Publications
Photodynamic therapy (PDT) applications carried out with the assistance of ultrasound have
attracted significant attention in recent years. The use of phthalocyanines, which are an …

Electrochemical recycling of homogeneous catalysts

S Cotty, J Jeon, J Elbert, VS Jeyaraj, AV Mironenko… - Science …, 2022 - science.org
Homogeneous catalysts have rapid kinetics and keen reaction selectivity. However, their
widespread use for industrial catalysis has remained limited because of challenges in …

Further along the road less traveled: AMBER ff15ipq, an original protein force field built on a self-consistent physical model

KT Debiec, DS Cerutti, LR Baker… - Journal of chemical …, 2016 - ACS Publications
We present the AMBER ff15ipq force field for proteins, the second-generation force field
developed using the Implicitly Polarized Q (IPolQ) scheme for deriving implicitly polarized …

3D printing of supramolecular polymer hydrogels with hierarchical structure

NA Sather, H Sai, IR Sasselli, K Sato, W Ji… - Small, 2021 - Wiley Online Library
Liquid crystalline hydrogels are an attractive class of soft materials to direct charge transport,
mechanical actuation, and cell migration. When such systems contain supramolecular …

Luteolin and abyssinone II as potential inhibitors of SARS-CoV-2: An in silico molecular modeling approach in battling the COVID-19 outbreak

MMAK Shawan, SK Halder, MA Hasan - Bulletin of the National Research …, 2021 - Springer
Background At present, the entire world is in a war against COVID-19 pandemic which has
gradually led us toward a more compromised “new normal” life. SARS-CoV-2, the …

Surface enhanced Raman scattering encoded gold nanostars for multiplexed cell discrimination

D Jimenez de Aberasturi, AB Serrano-Montes… - Chemistry of …, 2016 - ACS Publications
Labeled nanoparticles have attracted much interest toward applications in bioimaging and
diagnostics. In particular, surface enhanced Raman scattering (SERS) nanotags have been …