[HTML][HTML] Features and applications of haplotypes in crop breeding
Climate change with altered pest-disease dynamics and rising abiotic stresses threatens
resource-constrained agricultural production systems worldwide. Genomics-assisted …
resource-constrained agricultural production systems worldwide. Genomics-assisted …
[HTML][HTML] The integrated genomics of crop domestication and breeding
X Huang, S Huang, B Han, J Li - Cell, 2022 - cell.com
As a major event in human civilization, wild plants were successfully domesticated to be
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …
YaHS: yet another Hi-C scaffolding tool
C Zhou, SA McCarthy, R Durbin - Bioinformatics, 2023 - academic.oup.com
We present YaHS, a user-friendly command-line tool for the construction of chromosome-
scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal …
scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal …
[HTML][HTML] Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis
Tea is an important global beverage crop and is largely clonally propagated. Despite
previous studies on the species, its genetic and evolutionary history deserves further …
previous studies on the species, its genetic and evolutionary history deserves further …
[HTML][HTML] Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum
Abstract Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important
ornamental plant with great economic, cultural, and symbolic value. However, research on …
ornamental plant with great economic, cultural, and symbolic value. However, research on …
[HTML][HTML] Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa
Artificially improving traits of cultivated alfalfa (Medicago sativa L.), one of the most important
forage crops, is challenging due to the lack of a reference genome and an efficient genome …
forage crops, is challenging due to the lack of a reference genome and an efficient genome …
Green plant genomes: What we know in an era of rapidly expanding opportunities
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …
novo genomes are being generated for all known eukaryotic species as advocated by the …
[HTML][HTML] Haplotype-resolved genome analyses of a heterozygous diploid potato
Potato (Solanum tuberosum L.) is the most important tuber crop worldwide. Efforts are
underway to transform the crop from a clonally propagated tetraploid into a seed …
underway to transform the crop from a clonally propagated tetraploid into a seed …
[HTML][HTML] Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
Potato is the most widely produced tuber crop worldwide. However, reconstructing the four
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
Plotsr: visualizing structural similarities and rearrangements between multiple genomes
M Goel, K Schneeberger - Bioinformatics, 2022 - academic.oup.com
Third-generation genome sequencing technologies have led to a sharp increase in the
number of high-quality genome assemblies. This allows the comparison of multiple …
number of high-quality genome assemblies. This allows the comparison of multiple …