T-cell epitope vaccine design by immunoinformatics
A Patronov, I Doytchinova - Open biology, 2013 - royalsocietypublishing.org
Vaccination is generally considered to be the most effective method of preventing infectious
diseases. All vaccinations work by presenting a foreign antigen to the immune system in …
diseases. All vaccinations work by presenting a foreign antigen to the immune system in …
An introduction to epitope prediction methods and software
X Yang, X Yu - Reviews in medical virology, 2009 - Wiley Online Library
In this paper, current prediction methods and algorithms for both T‐and B cell epitopes are
reviewed, and a comprehensive summary of epitope prediction software and databases …
reviewed, and a comprehensive summary of epitope prediction software and databases …
Sub‐angstrom modeling of complexes between flexible peptides and globular proteins
A wide range of regulatory processes in the cell are mediated by flexible peptides that fold
upon binding to globular proteins. Computational efforts to model these interactions are …
upon binding to globular proteins. Computational efforts to model these interactions are …
[HTML][HTML] Structure based prediction of neoantigen immunogenicity
TP Riley, GLJ Keller, AR Smith, LM Davancaze… - Frontiers in …, 2019 - frontiersin.org
The development of immunological therapies that incorporate peptide antigens presented to
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …
DynaDock: A new molecular dynamics‐based algorithm for protein–peptide docking including receptor flexibility
I Antes - Proteins: Structure, Function, and Bioinformatics, 2010 - Wiley Online Library
Molecular docking programs play an important role in drug development and many well‐
established methods exist. However, there are two situations for which the performance of …
established methods exist. However, there are two situations for which the performance of …
Emerging concepts in TCR specificity: rationalizing and (maybe) predicting outcomes
T cell specificity emerges from a myriad of processes, ranging from the biological pathways
that control T cell signaling to the structural and physical mechanisms that influence how …
that control T cell signaling to the structural and physical mechanisms that influence how …
Prediction of MHC-peptide binding: a systematic and comprehensive overview
EM Lafuente, PA Reche - Current pharmaceutical design, 2009 - ingentaconnect.com
T cell immune responses are driven by the recognition of peptide antigens (T cell epitopes)
that are bound to major histocompatibility complex (MHC) molecules. T cell epitope …
that are bound to major histocompatibility complex (MHC) molecules. T cell epitope …
[HTML][HTML] PANDORA v2. 0: Benchmarking peptide-MHC II models and software improvements
FM Parizi, DF Marzella, G Ramakrishnan… - Frontiers in …, 2023 - frontiersin.org
T-cell specificity to differentiate between self and non-self relies on T-cell receptor (TCR)
recognition of peptides presented by the Major Histocompatibility Complex (MHC) …
recognition of peptides presented by the Major Histocompatibility Complex (MHC) …
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …
essential to many fields in human health, including vaccine development and personalized …
Computer-aided biotechnology: from immuno-informatics to reverse vaccinology
S Vivona, JL Gardy, S Ramachandran… - Trends in …, 2008 - cell.com
Genome sequences from many organisms, including humans, have been completed, and
high-throughput analyses have produced burgeoning volumes of 'omics' data …
high-throughput analyses have produced burgeoning volumes of 'omics' data …