[HTML][HTML] Epigenetic and long-term effects of nicotine on biology, behavior, and health

TJ Gould - Pharmacological Research, 2023 - Elsevier
Tobacco and nicotine use are associated with disease susceptibility and progression.
Health challenges associated with nicotine and smoking include developmental delays …

Evolutionary constraint and innovation across hundreds of placental mammals

MJ Christmas, IM Kaplow, DP Genereux, MX Dong… - Science, 2023 - science.org
Zoonomia is the largest comparative genomics resource for mammals produced to date. By
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …

Neuronal enhancers fine-tune adaptive circuit plasticity

EC Griffith, AE West, ME Greenberg - Neuron, 2024 - cell.com
Neuronal activity-regulated gene expression plays a crucial role in sculpting neural circuits
that underpin adaptive brain function. Transcriptional enhancers are now recognized as key …

Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

IM Kaplow, AJ Lawler, DE Schäffer, C Srinivasan… - Science, 2023 - science.org
Protein-coding differences between species often fail to explain phenotypic diversity,
suggesting the involvement of genomic elements that regulate gene expression such as …

Vocal learning–associated convergent evolution in mammalian proteins and regulatory elements

ME Wirthlin, TA Schmid, JE Elie, X Zhang, A Kowalczyk… - Science, 2024 - science.org
Vocal production learning (“vocal learning”) is a convergently evolved trait in vertebrates. To
identify brain genomic elements associated with mammalian vocal learning, we integrated …

Long non-coding RNAs expression and regulation across different brain regions in primates

M Navandar, C Vennin, B Lutz, S Gerber - Scientific Data, 2024 - nature.com
Human and non-human primates have strikingly similar genomes, but they strongly differ in
many brain-based processes (eg, behaviour and cognition). While the functions of protein …

Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin

IM Kaplow, DE Schäffer, ME Wirthlin, AJ Lawler… - BMC genomics, 2022 - Springer
Background Evolutionary conservation is an invaluable tool for inferring functional
significance in the genome, including regions that are crucial across many species and …

Comprehensive identification of GASA genes in sunflower and expression profiling in response to drought

MA Ullah, MA Ahmed, L AlHusnain, MAB Zia… - BMC genomics, 2024 - Springer
Drought stress poses a critical threat to global crop yields and sustainable agriculture. The
GASA genes are recognized for their pivotal role in stress tolerance and plant growth, but …

[HTML][HTML] Noncoding RNA therapeutics for substance use disorder

SA Seyednejad, GC Sartor - Advances in drug and alcohol …, 2022 - frontierspartnerships.org
Although noncoding RNAs (ncRNAs) have been shown to regulate maladaptive
neuroadaptations that drive compulsive drug use, ncRNA-targeting therapeutics for …

Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum

MD Carpenter, DK Fischer, S Zhang, AM Bond… - Nature …, 2022 - nature.com
Epigenetic gene regulation in the heterogeneous brain remains challenging to decipher with
current strategies. Bulk tissue analysis from pooled subjects reflects the average of cell-type …